Analysis of interatomic Contacts of Structural Units in PDB entry:
6I1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I1F entry

There are 2 chains in PDB entry 6I1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 259TRP 601
B
 GLN 260TRP 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6I1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
266 284Right-handed alpha
Helix 2
AA2
A
309 314Right-handed alpha
Helix 3
AA3
A
318 321Right-handed 310
Helix 4
AA4
A
322 333Right-handed alpha
Helix 5
AA5
A
369 376Right-handed alpha
Helix 6
AA6
A
377 386Right-handed alpha
Helix 7
AA7
A
389 400Right-handed alpha
Helix 8
AA8
A
420 424Right-handed 310
Helix 9
AA9
A
425 432Right-handed alpha
Helix 10
AB1
A
433 435Right-handed 310
Helix 11
AB2
A
441 451Right-handed alpha
Helix 12
AB3
A
452 454Right-handed 310
Helix 13
AB4
A
487 499Right-handed alpha
Helix 14
AB5
A
567 572Right-handed alpha
Helix 15
AB6
A
572 587Right-handed alpha
Helix 16
AB7
B
266 284Right-handed alpha
Helix 17
AB8
B
309 314Right-handed alpha
Helix 18
AB9
B
318 321Right-handed 310
Helix 19
AC1
B
322 333Right-handed alpha
Helix 20
AC2
B
369 376Right-handed alpha
Helix 21
AC3
B
377 386Right-handed alpha
Helix 22
AC4
B
389 400Right-handed alpha
Helix 23
AC5
B
420 424Right-handed 310
Helix 24
AC6
B
425 432Right-handed alpha
Helix 25
AC7
B
433 435Right-handed 310
Helix 26
AC8
B
441 451Right-handed alpha
Helix 27
AC9
B
452 454Right-handed 310
Helix 28
AD1
B
487 499Right-handed alpha
Helix 29
AD2
B
567 572Right-handed alpha
Helix 30
AD3
B
572 587Right-handed alpha
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There are 9 sheets in PDB entry 6I1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
288 295anti-parallel
Strand 3
A
553 561anti-parallel
Strand 4
A
537 546anti-parallel
Strand 5
A
520 528anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
365 368anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
355 357anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
483 484anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 305first strand
Strand 2
B
288 295anti-parallel
Strand 3
B
553 561anti-parallel
Strand 4
B
537 546anti-parallel
Strand 5
B
520 528anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 344first strand
Strand 2
B
365 368anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
355 357anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 458first strand
Strand 2
B
483 484anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 468first strand
Strand 2
B
474 476anti-parallel
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