Analysis of interatomic Contacts of Structural Units in PDB entry:
6I1N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I1N entry

There are 3 chains in PDB entry 6I1N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 41ILE 321
B
 LYS 41ASN 320
C
 LYS 41ILE 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6I1N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 114Right-handed alpha
Helix 2
AA2
A
128 135Right-handed alpha
Helix 3
AA3
A
149 160Right-handed alpha
Helix 4
AA4
A
160 165Right-handed alpha
Helix 5
AA5
A
166 169Right-handed 310
Helix 6
AA6
A
178 186Right-handed alpha
Helix 7
AA7
A
210 219Right-handed alpha
Helix 8
AA8
A
236 251Right-handed alpha
Helix 9
AA9
A
264 266Right-handed 310
Helix 10
AB1
A
290 294Right-handed 310
Helix 11
AB2
A
300 307Right-handed alpha
Helix 12
AB3
A
311 319Right-handed alpha
Helix 13
AB4
B
98 112Right-handed alpha
Helix 14
AB5
B
128 136Right-handed alpha
Helix 15
AB6
B
149 160Right-handed alpha
Helix 16
AB7
B
160 165Right-handed alpha
Helix 17
AB8
B
166 169Right-handed 310
Helix 18
AB9
B
178 185Right-handed alpha
Helix 19
AC1
B
210 219Right-handed alpha
Helix 20
AC2
B
236 251Right-handed alpha
Helix 21
AC3
B
264 266Right-handed 310
Helix 22
AC4
B
290 294Right-handed 310
Helix 23
AC5
B
300 307Right-handed alpha
Helix 24
AC6
B
311 320Right-handed alpha
Helix 25
AC7
C
98 114Right-handed alpha
Helix 26
AC8
C
128 136Right-handed alpha
Helix 27
AC9
C
149 160Right-handed alpha
Helix 28
AD1
C
160 165Right-handed alpha
Helix 29
AD2
C
166 169Right-handed 310
Helix 30
AD3
C
178 184Right-handed alpha
Helix 31
AD4
C
210 219Right-handed alpha
Helix 32
AD5
C
236 249Right-handed alpha
Helix 33
AD6
C
264 266Right-handed 310
Helix 34
AD7
C
290 294Right-handed 310
Helix 35
AD8
C
300 307Right-handed alpha
Helix 36
AD9
C
311 319Right-handed alpha
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There are 6 sheets in PDB entry 6I1N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
56 68anti-parallel
Strand 3
A
73 79anti-parallel
Strand 4
A
84 88anti-parallel
Strand 5
A
91 95anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
142 147parallel
Strand 3
A
119 124parallel
Strand 4
A
190 196parallel
Strand 5
A
220 229parallel
Strand 6
A
268 275anti-parallel
Strand 7
A
253 260anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
54 68anti-parallel
Strand 3
C
54 68anti-parallel
Strand 4
C
43 46anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 95first strand
Strand 2
B
84 88anti-parallel
Strand 3
B
73 79anti-parallel
Strand 4
B
54 68anti-parallel
Strand 5
C
54 68anti-parallel
Strand 6
C
73 79anti-parallel
Strand 7
C
84 88anti-parallel
Strand 8
C
91 95anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 175first strand
Strand 2
B
142 146parallel
Strand 3
B
119 124parallel
Strand 4
B
190 196parallel
Strand 5
B
220 229parallel
Strand 6
B
268 275anti-parallel
Strand 7
B
253 260anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 175first strand
Strand 2
C
142 146parallel
Strand 3
C
119 124parallel
Strand 4
C
190 196parallel
Strand 5
C
220 229parallel
Strand 6
C
268 275anti-parallel
Strand 7
C
253 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il