Analysis of interatomic Contacts of Structural Units in PDB entry:
6I1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I1T entry

There is 1 chain in PDB entry 6I1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 26SER 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6I1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 141Right-handed 310
Helix 2
AA2
A
179 188Right-handed 310
Helix 3
AA3
A
198 200Right-handed 310
Helix 4
AA4
A
210 212Right-handed 310
Helix 5
AA5
A
252 255Right-handed 310
Helix 6
AA6
A
312 320Right-handed alpha
Helix 7
AA7
A
392 396Right-handed 310
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There are 9 sheets in PDB entry 6I1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
362 367anti-parallel
Strand 4
A
344 349anti-parallel
Strand 5
A
337 338anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 50first strand
Strand 2
A
423 429anti-parallel
Strand 3
A
414 418anti-parallel
Strand 4
A
403 408anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
67 71anti-parallel
Strand 3
A
75 83anti-parallel
Strand 4
A
89 99anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
115 119anti-parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
135 136anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
115 119anti-parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
142 146anti-parallel
Strand 5
A
207 208parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
191 196anti-parallel
Strand 4
A
213 217anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
233 238anti-parallel
Strand 3
A
258 265anti-parallel
Strand 4
A
325 327anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
249 250anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il