Analysis of interatomic Contacts of Structural Units in PDB entry:
6I3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I3D entry

There are 2 chains in PDB entry 6I3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2PRO 215
B
 ASN -3GLY 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6I3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
42 58Right-handed alpha
Helix 4
AA4
A
70 78Right-handed alpha
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
108 110Right-handed 310
Helix 7
AA7
A
118 123Right-handed alpha
Helix 8
AA8
A
125 131Right-handed alpha
Helix 9
AA9
A
143 145Right-handed 310
Helix 10
AB1
A
146 157Right-handed alpha
Helix 11
AB2
A
176 186Right-handed alpha
Helix 12
AB3
B
4 17Right-handed alpha
Helix 13
AB4
B
21 36Right-handed alpha
Helix 14
AB5
B
42 58Right-handed alpha
Helix 15
AB6
B
70 78Right-handed alpha
Helix 16
AB7
B
92 107Right-handed alpha
Helix 17
AB8
B
108 110Right-handed 310
Helix 18
AB9
B
118 123Right-handed alpha
Helix 19
AC1
B
124 126Right-handed 310
Helix 20
AC2
B
143 145Right-handed 310
Helix 21
AC3
B
146 157Right-handed alpha
Helix 22
AC4
B
176 186Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6I3D.

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
85 90parallel
Strand 3
A
61 65parallel
Strand 4
A
135 140parallel
Strand 5
A
160 168parallel
Strand 6
A
204 212anti-parallel
Strand 7
A
189 197anti-parallel
Strand 8
B
189 197anti-parallel
Strand 9
B
204 212anti-parallel
Strand 10
B
160 168anti-parallel
Strand 11
B
135 140parallel
Strand 12
B
61 65parallel
Strand 13
B
85 90parallel
Strand 14
B
112 116parallel
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