Analysis of interatomic Contacts of Structural Units in PDB entry:
6I3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I3M entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 18 chains in PDB entry 6I3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ASP 305
C
LEU 247ALA 651
D
LEU 247ALA 651
E
SER 16ALA 381
G
GLU 24SER 433
I
SER 2THR 415
J
SER 2THR 415
B
MET 1ASP 305
H
GLU 24SER 433
F
SER 16ALA 381
K
THR 3LEU 51
K
ARG 53THR 265
M
VAL 127ARG 143
O
GLN 98LYS 519
L
THR 3LEU 51
L
ARG 53THR 265
N
VAL 127ARG 143
P
GLN 98LYS 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are136 helices in PDB entry 6I3M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
21 37Right-handed alpha
Helix 3
AA3
A
41 60Right-handed alpha
Helix 4
AA4
A
64 82Right-handed alpha
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
107 117Right-handed alpha
Helix 7
AA7
A
132 145Right-handed alpha
Helix 8
AA8
A
161 167Right-handed alpha
Helix 9
AA9
A
180 184Right-handed 310
Helix 10
AB1
A
212 222Right-handed alpha
Helix 11
AB2
A
291 302Right-handed alpha
Helix 12
AB3
C
271 283Right-handed alpha
Helix 13
AB4
C
289 306Right-handed alpha
Helix 14
AB5
C
318 334Right-handed alpha
Helix 15
AB6
C
337 353Right-handed alpha
Helix 16
AB7
C
361 378Right-handed alpha
Helix 17
AB8
C
379 391Right-handed alpha
Helix 18
AB9
C
392 394Right-handed 310
Helix 19
AC1
C
408 418Right-handed alpha
Helix 20
AC2
C
436 448Right-handed alpha
Helix 21
AC3
C
458 464Right-handed alpha
Helix 22
AC4
C
488 499Right-handed alpha
Helix 23
AC5
C
636 638Right-handed 310
Helix 24
AC6
C
639 647Right-handed alpha
Helix 25
AC7
D
271 283Right-handed alpha
Helix 26
AC8
D
289 306Right-handed alpha
Helix 27
AC9
D
318 334Right-handed alpha
Helix 28
AD1
D
337 353Right-handed alpha
Helix 29
AD2
D
361 378Right-handed alpha
Helix 30
AD3
D
379 391Right-handed alpha
Helix 31
AD4
D
392 394Right-handed 310
Helix 32
AD5
D
408 418Right-handed alpha
Helix 33
AD6
D
436 448Right-handed alpha
Helix 34
AD7
D
458 464Right-handed alpha
Helix 35
AD8
D
488 499Right-handed alpha
Helix 36
AD9
D
636 638Right-handed 310
Helix 37
AE1
D
639 647Right-handed alpha
Helix 38
AE2
E
18 31Right-handed alpha
Helix 39
AE3
E
37 53Right-handed alpha
Helix 40
AE4
E
59 78Right-handed alpha
Helix 41
AE5
E
82 107Right-handed alpha
Helix 42
AE6
E
121 126Right-handed 310
Helix 43
AE7
E
148 166Right-handed alpha
Helix 44
AE8
E
168 176Right-handed alpha
Helix 45
AE9
E
193 206Right-handed alpha
Helix 46
AF1
E
221 224Right-handed 310
Helix 47
AF2
E
225 236Right-handed alpha
Helix 48
AF3
E
277 288Right-handed alpha
Helix 49
AF4
E
297 301Right-handed 310
Helix 50
AF5
E
308 313Right-handed 310
Helix 51
AF6
E
357 360Right-handed 310
Helix 52
AF7
E
361 369Right-handed alpha
Helix 53
AF8
G
48 52Right-handed 310
Helix 54
AF9
G
59 70Right-handed alpha
Helix 55
AG1
G
83 92Right-handed alpha
Helix 56
AG2
G
116 126Right-handed alpha
Helix 57
AG3
G
145 159Right-handed alpha
Helix 58
AG4
G
240 249Right-handed alpha
Helix 59
AG5
G
287 300Right-handed alpha
Helix 60
AG6
I
75 84Right-handed alpha
Helix 61
AG7
I
119 128Right-handed alpha
Helix 62
AG8
I
150 157Right-handed alpha
Helix 63
AG9
I
180 189Right-handed alpha
Helix 64
AH1
I
257 262Right-handed alpha
Helix 65
AH2
I
282 287Right-handed alpha
Helix 66
AH3
I
403 411Right-handed alpha
Helix 67
AH4
J
75 84Right-handed alpha
Helix 68
AH5
J
119 128Right-handed alpha
Helix 69
AH6
J
150 157Right-handed alpha
Helix 70
AH7
J
180 189Right-handed alpha
Helix 71
AH8
J
257 262Right-handed alpha
Helix 72
AH9
J
282 287Right-handed alpha
Helix 73
AI1
J
403 411Right-handed alpha
Helix 74
AI2
B
9 14Right-handed alpha
Helix 75
AI3
B
21 37Right-handed alpha
Helix 76
AI4
B
41 60Right-handed alpha
Helix 77
AI5
B
64 82Right-handed alpha
Helix 78
AI6
B
89 99Right-handed alpha
Helix 79
AI7
B
107 117Right-handed alpha
Helix 80
AI8
B
132 145Right-handed alpha
Helix 81
AI9
B
161 167Right-handed alpha
Helix 82
AJ1
B
180 184Right-handed 310
Helix 83
AJ2
B
212 222Right-handed alpha
Helix 84
AJ3
B
291 302Right-handed alpha
Helix 85
AJ4
H
48 52Right-handed 310
Helix 86
AJ5
H
59 70Right-handed alpha
Helix 87
AJ6
H
83 92Right-handed alpha
Helix 88
AJ7
H
116 126Right-handed alpha
Helix 89
AJ8
H
145 159Right-handed alpha
Helix 90
AJ9
H
240 249Right-handed alpha
Helix 91
AK1
H
287 300Right-handed alpha
Helix 92
AK2
F
18 31Right-handed alpha
Helix 93
AK3
F
37 53Right-handed alpha
Helix 94
AK4
F
59 78Right-handed alpha
Helix 95
AK5
F
82 107Right-handed alpha
Helix 96
AK6
F
121 126Right-handed 310
Helix 97
AK7
F
148 166Right-handed alpha
Helix 98
AK8
F
168 176Right-handed alpha
Helix 99
AK9
F
193 206Right-handed alpha
Helix 100
AL1
F
221 224Right-handed 310
Helix 101
AL2
F
225 236Right-handed alpha
Helix 102
AL3
F
277 288Right-handed alpha
Helix 103
AL4
F
297 301Right-handed 310
Helix 104
AL5
F
308 313Right-handed 310
Helix 105
AL6
F
357 360Right-handed 310
Helix 106
AL7
F
361 369Right-handed alpha
Helix 107
AL8
K
57 65Right-handed alpha
Helix 108
AL9
K
91 120Right-handed alpha
Helix 109
AM1
K
122 138Right-handed alpha
Helix 110
AM2
K
140 149Right-handed alpha
Helix 111
AM3
K
152 158Right-handed alpha
Helix 112
AM4
K
163 174Right-handed alpha
Helix 113
AM5
K
196 209Right-handed alpha
Helix 114
AM6
K
240 257Right-handed alpha
Helix 115
AM7
M
131 141Right-handed alpha
Helix 116
AM8
O
112 121Right-handed alpha
Helix 117
AM9
O
130 135Right-handed alpha
Helix 118
AN1
O
201 209Right-handed alpha
Helix 119
AN2
O
226 239Right-handed alpha
Helix 120
AN3
O
257 270Right-handed alpha
Helix 121
AN4
O
290 301Right-handed alpha
Helix 122
AN5
L
57 65Right-handed alpha
Helix 123
AN6
L
91 120Right-handed alpha
Helix 124
AN7
L
122 138Right-handed alpha
Helix 125
AN8
L
140 149Right-handed alpha
Helix 126
AN9
L
152 158Right-handed alpha
Helix 127
AO1
L
163 174Right-handed alpha
Helix 128
AO2
L
196 209Right-handed alpha
Helix 129
AO3
L
240 257Right-handed alpha
Helix 130
AO4
N
131 141Right-handed alpha
Helix 131
AO5
P
112 121Right-handed alpha
Helix 132
AO6
P
130 135Right-handed alpha
Helix 133
AO7
P
201 209Right-handed alpha
Helix 134
AO8
P
226 239Right-handed alpha
Helix 135
AO9
P
257 270Right-handed alpha
Helix 136
AP1
P
290 301Right-handed alpha
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There are 48 sheets in PDB entry 6I3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
176 178first strand
Strand 2
A
150 153parallel
Strand 3
A
125 128parallel
Strand 4
A
193 196parallel
Strand 5
A
227 230parallel
Strand 6
A
282 285parallel
Strand 7
A
288 290anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
398 401first strand
Strand 2
C
424 427parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
429 430first strand
Strand 2
C
452 455parallel
Strand 3
E
332 333parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
470 473first strand
Strand 2
C
503 506parallel
Strand 3
C
627 629parallel
Strand 4
C
634 635anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
476 477first strand
Strand 2
C
483 486anti-parallel
Strand 3
C
617 618anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
398 401first strand
Strand 2
D
424 427parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
429 430first strand
Strand 2
D
452 455parallel
Strand 3
F
332 333parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
470 473first strand
Strand 2
D
503 506parallel
Strand 3
D
627 629parallel
Strand 4
D
634 635anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
476 477first strand
Strand 2
D
483 486anti-parallel
Strand 3
D
617 618anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
241 242first strand
Strand 2
E
212 215parallel
Strand 3
E
185 188parallel
Strand 4
E
257 261parallel
Strand 5
E
292 295parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
264 265first strand
Strand 2
E
271 272anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
349 351first strand
Strand 2
E
354 356anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
103 108first strand
Strand 2
G
72 79parallel
Strand 3
G
27 32parallel
Strand 4
G
132 136parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
139 141first strand
Strand 2
G
282 284anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
236 238first strand
Strand 2
G
164 168anti-parallel
Strand 3
G
276 277parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
194 196first strand
Strand 2
G
185 188anti-parallel
Strand 3
G
223 227anti-parallel
Strand 4
J
265 269anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
211 212first strand
Strand 2
J
254 255anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
319 320first strand
Strand 2
G
325 327anti-parallel
Strand 3
G
343 345parallel
Strand 4
G
361 362parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
338 339first strand
Strand 2
G
356 358parallel
Strand 3
G
373 375parallel
Strand 4
G
391 392parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
367 368first strand
Strand 2
G
384 385parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
3 4first strand
Strand 2
I
166 167parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
201 202first strand
Strand 2
I
272 273anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
254 255first strand
Strand 2
H
211 212anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
265 269first strand
Strand 2
H
223 227anti-parallel
Strand 3
H
185 188anti-parallel
Strand 4
H
194 196anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
3 4first strand
Strand 2
J
166 167parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
201 202first strand
Strand 2
J
272 273anti-parallel
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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
176 178first strand
Strand 2
B
150 153parallel
Strand 3
B
125 128parallel
Strand 4
B
193 196parallel
Strand 5
B
227 230parallel
Strand 6
B
282 285parallel
Strand 7
B
288 290anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
103 108first strand
Strand 2
H
72 79parallel
Strand 3
H
27 32parallel
Strand 4
H
132 136parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
139 141first strand
Strand 2
H
282 284anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
236 238first strand
Strand 2
H
164 168anti-parallel
Strand 3
H
276 277parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
319 320first strand
Strand 2
H
325 327anti-parallel
Strand 3
H
343 345parallel
Strand 4
H
361 362parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
338 339first strand
Strand 2
H
356 358parallel
Strand 3
H
373 375parallel
Strand 4
H
391 392parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
367 368first strand
Strand 2
H
384 385parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
241 242first strand
Strand 2
F
212 215parallel
Strand 3
F
185 188parallel
Strand 4
F
257 261parallel
Strand 5
F
292 295parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
264 265first strand
Strand 2
F
271 272anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
349 351first strand
Strand 2
F
354 356anti-parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
35 36first strand
Strand 2
K
19 23anti-parallel
Strand 3
K
68 72anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
219 222first strand
Strand 2
K
227 233anti-parallel
Strand 3
K
183 190anti-parallel
Strand 4
K
262 263anti-parallel
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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
144 149first strand
Strand 2
O
184 193anti-parallel
Strand 3
O
102 107parallel
Strand 4
O
213 218parallel
Strand 5
O
244 248parallel
Strand 6
O
280 282parallel
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There are 8 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
385 387first strand
Strand 2
O
370 382anti-parallel
Strand 3
O
394 400anti-parallel
Strand 4
O
336 344anti-parallel
Strand 5
O
314 322anti-parallel
Strand 6
O
415 419anti-parallel
Strand 7
O
352 360anti-parallel
Strand 8
O
370 382anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
347 348first strand
Strand 2
O
389 390anti-parallel
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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
425 441first strand
Strand 2
O
482 493anti-parallel
Strand 3
O
469 478anti-parallel
Strand 4
O
461 466anti-parallel
Strand 5
O
498 504anti-parallel
Strand 6
O
509 517anti-parallel
Strand 7
O
425 441anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
35 36first strand
Strand 2
L
19 23anti-parallel
Strand 3
L
68 72anti-parallel
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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
183 189first strand
Strand 2
L
227 233anti-parallel
Strand 3
L
219 222anti-parallel
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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
144 149first strand
Strand 2
P
184 193anti-parallel
Strand 3
P
102 107parallel
Strand 4
P
213 218parallel
Strand 5
P
244 248parallel
Strand 6
P
280 282parallel
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There are 8 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
385 387first strand
Strand 2
P
370 382anti-parallel
Strand 3
P
394 400anti-parallel
Strand 4
P
336 344anti-parallel
Strand 5
P
314 322anti-parallel
Strand 6
P
415 419anti-parallel
Strand 7
P
352 360anti-parallel
Strand 8
P
370 382anti-parallel
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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
347 348first strand
Strand 2
P
389 390anti-parallel
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There are 7 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
425 441first strand
Strand 2
P
482 493anti-parallel
Strand 3
P
469 478anti-parallel
Strand 4
P
461 466anti-parallel
Strand 5
P
498 504anti-parallel
Strand 6
P
509 517anti-parallel
Strand 7
P
425 441anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il