Analysis of interatomic Contacts of Structural Units in PDB entry:
6I60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6I60 entry

There are 2 chains in PDB entry 6I60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 943
B	LYS 25	LYS 943

There are 45 helices in PDB entry 6I60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	81	Right-handed alpha
Helix 2	AA2	A	235	238	Right-handed 310
Helix 3	AA3	A	255	259	Right-handed 310
Helix 4	AA4	A	308	310	Right-handed 310
Helix 5	AA5	A	405	409	Right-handed 310
Helix 6	AA6	A	472	489	Right-handed alpha
Helix 7	AA7	A	506	513	Right-handed alpha
Helix 8	AA8	A	513	521	Right-handed alpha
Helix 9	AA9	A	523	536	Right-handed alpha
Helix 10	AB1	A	558	563	Right-handed alpha
Helix 11	AB2	A	563	577	Right-handed alpha
Helix 12	AB3	A	579	585	Right-handed alpha
Helix 13	AB4	A	585	600	Right-handed alpha
Helix 14	AB5	A	625	649	Right-handed alpha
Helix 15	AB6	A	650	672	Right-handed alpha
Helix 16	AB7	A	721	730	Right-handed alpha
Helix 17	AB8	A	737	751	Right-handed alpha
Helix 18	AB9	A	760	774	Right-handed alpha
Helix 19	AC1	A	776	785	Right-handed alpha
Helix 20	AC2	A	791	798	Right-handed alpha
Helix 21	AC3	A	821	824	Right-handed 310
Helix 22	AC4	A	825	833	Right-handed alpha
Helix 23	AC5	A	841	844	Right-handed 310
Helix 24	AC6	B	76	81	Right-handed alpha
Helix 25	AC7	B	141	145	Right-handed 310
Helix 26	AC8	B	255	259	Right-handed 310
Helix 27	AC9	B	308	310	Right-handed 310
Helix 28	AD1	B	405	409	Right-handed 310
Helix 29	AD2	B	472	489	Right-handed alpha
Helix 30	AD3	B	506	513	Right-handed alpha
Helix 31	AD4	B	513	521	Right-handed alpha
Helix 32	AD5	B	523	538	Right-handed alpha
Helix 33	AD6	B	558	563	Right-handed alpha
Helix 34	AD7	B	563	577	Right-handed alpha
Helix 35	AD8	B	579	585	Right-handed alpha
Helix 36	AD9	B	585	599	Right-handed alpha
Helix 37	AE1	B	625	648	Right-handed alpha
Helix 38	AE2	B	650	672	Right-handed alpha
Helix 39	AE3	B	720	730	Right-handed alpha
Helix 40	AE4	B	737	751	Right-handed alpha
Helix 41	AE5	B	760	774	Right-handed alpha
Helix 42	AE6	B	776	785	Right-handed alpha
Helix 43	AE7	B	791	798	Right-handed alpha
Helix 44	AE8	B	821	824	Right-handed 310
Helix 45	AE9	B	825	833	Right-handed alpha

There are 25 sheets in PDB entry 6I60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	52	56	anti-parallel
Strand 3	A	99	101	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	133	137	parallel
Strand 3	A	112	120	anti-parallel
Strand 4	A	68	74	anti-parallel
Strand 5	A	88	89	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	328	329	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	171	174	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	242	250	anti-parallel
Strand 4	A	177	184	anti-parallel
Strand 5	A	288	291	anti-parallel
Strand 6	A	325	326	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	189	199	anti-parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	278	282	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	336	338	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	298	first strand
Strand 2	A	302	306	anti-parallel
Strand 3	A	414	418	parallel
Strand 4	A	388	394	anti-parallel
Strand 5	A	434	442	anti-parallel
Strand 6	A	363	380	anti-parallel
Strand 7	A	355	357	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	351	first strand
Strand 2	A	453	460	anti-parallel
Strand 3	A	363	380	anti-parallel
Strand 4	A	425	427	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	397	first strand
Strand 2	A	403	404	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	470	first strand
Strand 2	A	859	866	anti-parallel
Strand 3	A	869	877	anti-parallel
Strand 4	A	882	888	anti-parallel
Strand 5	A	935	941	anti-parallel
Strand 6	A	908	909	anti-parallel
Strand 7	A	912	913	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	674	first strand
Strand 2	A	677	678	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	837	839	first strand
Strand 2	A	846	849	anti-parallel
Strand 3	A	893	899	parallel
Strand 4	A	927	932	anti-parallel
Strand 5	A	922	923	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	52	56	anti-parallel
Strand 3	B	99	101	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	133	137	parallel
Strand 3	B	112	120	anti-parallel
Strand 4	B	68	74	anti-parallel
Strand 5	B	88	89	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	328	329	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	171	174	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	241	250	anti-parallel
Strand 4	B	177	185	anti-parallel
Strand 5	B	288	291	anti-parallel
Strand 6	B	325	326	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	189	199	anti-parallel
Strand 3	B	264	273	anti-parallel
Strand 4	B	280	282	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	336	338	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	298	first strand
Strand 2	B	302	306	anti-parallel
Strand 3	B	414	418	parallel
Strand 4	B	388	394	anti-parallel
Strand 5	B	434	442	anti-parallel
Strand 6	B	363	380	anti-parallel
Strand 7	B	355	360	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	351	first strand
Strand 2	B	453	460	anti-parallel
Strand 3	B	363	380	anti-parallel
Strand 4	B	425	427	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	397	first strand
Strand 2	B	403	404	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	470	first strand
Strand 2	B	859	866	anti-parallel
Strand 3	B	869	877	anti-parallel
Strand 4	B	882	888	anti-parallel
Strand 5	B	935	942	anti-parallel
Strand 6	B	906	908	anti-parallel
Strand 7	B	913	915	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	837	841	first strand
Strand 2	B	846	849	anti-parallel
Strand 3	B	893	899	parallel
Strand 4	B	927	932	anti-parallel
Strand 5	B	922	923	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6I60

Analysis of interatomic Contacts of Structural Units in PDB entry:
6I60