Analysis of interatomic Contacts of Structural Units in PDB entry:
6I6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I6J entry

There are 2 chains in PDB entry 6I6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 204
C
 GLN 2ALA 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6I6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 27Right-handed alpha
Helix 2
AA2
A
33 48Right-handed alpha
Helix 3
AA3
A
57 80Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
95 109Right-handed alpha
Helix 6
AA6
A
114 130Right-handed alpha
Helix 7
AA7
A
131 142Right-handed alpha
Helix 8
AA8
A
148 174Right-handed alpha
Helix 9
AA9
A
177 202Right-handed alpha
Helix 10
AB1
C
63 66Right-handed 310
Helix 11
AB2
C
75 77Right-handed 310
Helix 12
AB3
C
88 92Right-handed 310
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There are 3 sheets in PDB entry 6I6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
19 27anti-parallel
Strand 3
C
79 84anti-parallel
Strand 4
C
69 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
116 120parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
33 40anti-parallel
Strand 5
C
47 53anti-parallel
Strand 6
C
59 61anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
116 120parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
110 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il