Analysis of interatomic Contacts of Structural Units in PDB entry:
6I7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6I7D entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 6I7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	VAL 18
A	ASN 20	LYS 768
B	VAL 3	VAL 18
B	ASN 20	LYS 768
C	ALA 2	VAL 18
C	ASN 20	LYS 768
D	ALA 2	VAL 18
D	ASN 20	LYS 768

There are129 helices in PDB entry 6I7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	15	Right-handed alpha
Helix 2	AA2	A	41	47	Right-handed alpha
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	101	105	Right-handed 310
Helix 5	AA5	A	109	123	Right-handed alpha
Helix 6	AA6	A	147	157	Right-handed alpha
Helix 7	AA7	A	159	163	Right-handed 310
Helix 8	AA8	A	166	182	Right-handed alpha
Helix 9	AA9	A	196	210	Right-handed alpha
Helix 10	AB1	A	218	235	Right-handed alpha
Helix 11	AB2	A	274	279	Right-handed alpha
Helix 12	AB3	A	287	297	Right-handed alpha
Helix 13	AB4	A	298	305	Right-handed alpha
Helix 14	AB5	A	327	341	Right-handed alpha
Helix 15	AB6	A	345	364	Right-handed alpha
Helix 16	AB7	A	385	396	Right-handed alpha
Helix 17	AB8	A	399	408	Right-handed alpha
Helix 18	AB9	A	424	456	Right-handed alpha
Helix 19	AC1	A	480	513	Right-handed alpha
Helix 20	AC2	A	524	533	Right-handed alpha
Helix 21	AC3	A	537	548	Right-handed alpha
Helix 22	AC4	A	552	564	Right-handed alpha
Helix 23	AC5	A	596	602	Right-handed alpha
Helix 24	AC6	A	607	615	Right-handed alpha
Helix 25	AC7	A	618	625	Right-handed alpha
Helix 26	AC8	A	636	639	Right-handed 310
Helix 27	AC9	A	640	658	Right-handed alpha
Helix 28	AD1	A	679	690	Right-handed alpha
Helix 29	AD2	A	691	700	Right-handed alpha
Helix 30	AD3	A	709	715	Right-handed alpha
Helix 31	AD4	A	727	742	Right-handed alpha
Helix 32	AD5	A	759	768	Right-handed alpha
Helix 33	AD6	B	4	15	Right-handed alpha
Helix 34	AD7	B	41	47	Right-handed alpha
Helix 35	AD8	B	83	85	Right-handed 310
Helix 36	AD9	B	101	105	Right-handed 310
Helix 37	AE1	B	109	123	Right-handed alpha
Helix 38	AE2	B	147	157	Right-handed alpha
Helix 39	AE3	B	159	163	Right-handed 310
Helix 40	AE4	B	166	182	Right-handed alpha
Helix 41	AE5	B	196	210	Right-handed alpha
Helix 42	AE6	B	218	235	Right-handed alpha
Helix 43	AE7	B	274	279	Right-handed alpha
Helix 44	AE8	B	287	297	Right-handed alpha
Helix 45	AE9	B	298	306	Right-handed alpha
Helix 46	AF1	B	327	341	Right-handed alpha
Helix 47	AF2	B	345	364	Right-handed alpha
Helix 48	AF3	B	385	396	Right-handed alpha
Helix 49	AF4	B	399	408	Right-handed alpha
Helix 50	AF5	B	424	456	Right-handed alpha
Helix 51	AF6	B	480	513	Right-handed alpha
Helix 52	AF7	B	524	533	Right-handed alpha
Helix 53	AF8	B	537	548	Right-handed alpha
Helix 54	AF9	B	552	564	Right-handed alpha
Helix 55	AG1	B	596	602	Right-handed alpha
Helix 56	AG2	B	607	615	Right-handed alpha
Helix 57	AG3	B	618	625	Right-handed alpha
Helix 58	AG4	B	636	639	Right-handed 310
Helix 59	AG5	B	640	658	Right-handed alpha
Helix 60	AG6	B	679	690	Right-handed alpha
Helix 61	AG7	B	691	700	Right-handed alpha
Helix 62	AG8	B	709	713	Right-handed alpha
Helix 63	AG9	B	714	716	Right-handed 310
Helix 64	AH1	B	729	742	Right-handed alpha
Helix 65	AH2	B	760	766	Right-handed alpha
Helix 66	AH3	C	4	15	Right-handed alpha
Helix 67	AH4	C	41	47	Right-handed alpha
Helix 68	AH5	C	83	85	Right-handed 310
Helix 69	AH6	C	101	105	Right-handed 310
Helix 70	AH7	C	109	123	Right-handed alpha
Helix 71	AH8	C	147	157	Right-handed alpha
Helix 72	AH9	C	159	163	Right-handed 310
Helix 73	AI1	C	166	182	Right-handed alpha
Helix 74	AI2	C	196	210	Right-handed alpha
Helix 75	AI3	C	218	235	Right-handed alpha
Helix 76	AI4	C	274	279	Right-handed alpha
Helix 77	AI5	C	287	297	Right-handed alpha
Helix 78	AI6	C	298	305	Right-handed alpha
Helix 79	AI7	C	327	341	Right-handed alpha
Helix 80	AI8	C	345	364	Right-handed alpha
Helix 81	AI9	C	385	396	Right-handed alpha
Helix 82	AJ1	C	399	408	Right-handed alpha
Helix 83	AJ2	C	424	456	Right-handed alpha
Helix 84	AJ3	C	480	513	Right-handed alpha
Helix 85	AJ4	C	524	533	Right-handed alpha
Helix 86	AJ5	C	537	548	Right-handed alpha
Helix 87	AJ6	C	552	564	Right-handed alpha
Helix 88	AJ7	C	596	602	Right-handed alpha
Helix 89	AJ8	C	606	615	Right-handed alpha
Helix 90	AJ9	C	618	625	Right-handed alpha
Helix 91	AK1	C	636	639	Right-handed 310
Helix 92	AK2	C	640	658	Right-handed alpha
Helix 93	AK3	C	679	690	Right-handed alpha
Helix 94	AK4	C	691	700	Right-handed alpha
Helix 95	AK5	C	709	717	Right-handed alpha
Helix 96	AK6	C	720	725	Right-handed alpha
Helix 97	AK7	C	730	743	Right-handed alpha
Helix 98	AK8	C	761	768	Right-handed alpha
Helix 99	AK9	D	4	15	Right-handed alpha
Helix 100	AL1	D	41	47	Right-handed alpha
Helix 101	AL2	D	83	87	Right-handed 310
Helix 102	AL3	D	101	105	Right-handed 310
Helix 103	AL4	D	109	123	Right-handed alpha
Helix 104	AL5	D	147	157	Right-handed alpha
Helix 105	AL6	D	166	181	Right-handed alpha
Helix 106	AL7	D	196	210	Right-handed alpha
Helix 107	AL8	D	219	235	Right-handed alpha
Helix 108	AL9	D	274	279	Right-handed alpha
Helix 109	AM1	D	287	297	Right-handed alpha
Helix 110	AM2	D	298	305	Right-handed alpha
Helix 111	AM3	D	328	341	Right-handed alpha
Helix 112	AM4	D	345	364	Right-handed alpha
Helix 113	AM5	D	385	396	Right-handed alpha
Helix 114	AM6	D	399	408	Right-handed alpha
Helix 115	AM7	D	424	454	Right-handed alpha
Helix 116	AM8	D	480	513	Right-handed alpha
Helix 117	AM9	D	524	533	Right-handed alpha
Helix 118	AN1	D	537	548	Right-handed alpha
Helix 119	AN2	D	552	564	Right-handed alpha
Helix 120	AN3	D	596	602	Right-handed alpha
Helix 121	AN4	D	606	615	Right-handed alpha
Helix 122	AN5	D	618	625	Right-handed alpha
Helix 123	AN6	D	640	658	Right-handed alpha
Helix 124	AN7	D	679	690	Right-handed alpha
Helix 125	AN8	D	691	701	Right-handed alpha
Helix 126	AN9	D	709	716	Right-handed alpha
Helix 127	AO1	D	720	725	Right-handed alpha
Helix 128	AO2	D	730	742	Right-handed alpha
Helix 129	AO3	D	759	766	Right-handed alpha

There are 28 sheets in PDB entry 6I7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	A	53	57	anti-parallel
Strand 4	A	35	38	anti-parallel
Strand 5	A	87	89	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	133	137	anti-parallel
Strand 3	A	660	667	parallel
Strand 4	A	185	191	parallel
Strand 5	A	465	471	parallel
Strand 6	A	249	256	anti-parallel
Strand 7	A	262	270	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	245	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	372	first strand
Strand 2	A	375	381	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	419	422	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	572	first strand
Strand 2	A	580	585	anti-parallel
Strand 3	A	588	593	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	708	first strand
Strand 2	A	755	758	anti-parallel
Strand 3	A	749	751	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	B	53	57	anti-parallel
Strand 4	B	35	38	anti-parallel
Strand 5	B	87	89	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	133	137	anti-parallel
Strand 3	B	660	667	parallel
Strand 4	B	185	191	parallel
Strand 5	B	465	471	parallel
Strand 6	B	249	256	anti-parallel
Strand 7	B	262	270	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	245	246	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	375	381	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	413	first strand
Strand 2	B	418	422	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	572	first strand
Strand 2	B	580	585	anti-parallel
Strand 3	B	588	593	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	708	first strand
Strand 2	B	755	759	anti-parallel
Strand 3	B	749	751	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	C	53	57	anti-parallel
Strand 4	C	35	38	anti-parallel
Strand 5	C	87	89	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	133	137	anti-parallel
Strand 3	C	660	667	parallel
Strand 4	C	185	191	parallel
Strand 5	C	465	471	parallel
Strand 6	C	249	256	anti-parallel
Strand 7	C	262	270	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	245	246	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	368	first strand
Strand 2	C	380	381	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	421	422	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	570	572	first strand
Strand 2	C	580	585	anti-parallel
Strand 3	C	588	593	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	708	first strand
Strand 2	C	755	758	anti-parallel
Strand 3	C	749	750	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	82	first strand
Strand 2	D	66	72	anti-parallel
Strand 3	D	53	57	anti-parallel
Strand 4	D	35	38	anti-parallel
Strand 5	D	88	89	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	130	first strand
Strand 2	D	133	137	anti-parallel
Strand 3	D	660	667	parallel
Strand 4	D	185	191	parallel
Strand 5	D	465	470	parallel
Strand 6	D	249	256	anti-parallel
Strand 7	D	262	270	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	245	246	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	370	first strand
Strand 2	D	378	381	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	413	first strand
Strand 2	D	418	422	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	570	572	first strand
Strand 2	D	580	585	anti-parallel
Strand 3	D	588	593	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	708	first strand
Strand 2	D	755	758	anti-parallel
Strand 3	D	749	750	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6I7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6I7D