Analysis of interatomic Contacts of Structural Units in PDB entry:
6I7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I7E entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 6I7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 18
A
 ASN 20LYS 768
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 6I7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
41 46Right-handed alpha
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
A
101 105Right-handed 310
Helix 5
AA5
A
109 122Right-handed alpha
Helix 6
AA6
A
147 156Right-handed alpha
Helix 7
AA7
A
166 181Right-handed alpha
Helix 8
AA8
A
196 209Right-handed alpha
Helix 9
AA9
A
217 226Right-handed alpha
Helix 10
AB1
A
226 235Right-handed alpha
Helix 11
AB2
A
274 279Right-handed alpha
Helix 12
AB3
A
287 297Right-handed alpha
Helix 13
AB4
A
298 306Right-handed alpha
Helix 14
AB5
A
327 341Right-handed alpha
Helix 15
AB6
A
345 363Right-handed alpha
Helix 16
AB7
A
371 376Right-handed alpha
Helix 17
AB8
A
385 397Right-handed alpha
Helix 18
AB9
A
399 407Right-handed alpha
Helix 19
AC1
A
424 456Right-handed alpha
Helix 20
AC2
A
480 502Right-handed alpha
Helix 21
AC3
A
502 512Right-handed alpha
Helix 22
AC4
A
523 533Right-handed alpha
Helix 23
AC5
A
539 548Right-handed alpha
Helix 24
AC6
A
552 564Right-handed alpha
Helix 25
AC7
A
596 602Right-handed alpha
Helix 26
AC8
A
607 615Right-handed alpha
Helix 27
AC9
A
618 624Right-handed alpha
Helix 28
AD1
A
640 659Right-handed alpha
Helix 29
AD2
A
679 690Right-handed alpha
Helix 30
AD3
A
696 701Right-handed alpha
Helix 31
AD4
A
709 716Right-handed alpha
Helix 32
AD5
A
730 743Right-handed alpha
Helix 33
AD6
A
761 766Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6I7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
34 38anti-parallel
Strand 5
A
87 89anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
660 667parallel
Strand 4
A
185 190parallel
Strand 5
A
465 469parallel
Strand 6
A
249 257anti-parallel
Strand 7
A
261 270anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
245 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 370first strand
Strand 2
A
378 381anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
417 419anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 572first strand
Strand 2
A
581 584anti-parallel
Strand 3
A
589 592anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 708first strand
Strand 2
A
755 758anti-parallel
Strand 3
A
749 751anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il