Analysis of interatomic Contacts of Structural Units in PDB entry:
6I8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I8F entry

There are 2 chains in PDB entry 6I8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 315
B
 MET 1THR 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6I8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 19Right-handed alpha
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
28 42Right-handed alpha
Helix 4
AA4
A
96 98Right-handed 310
Helix 5
AA5
A
99 111Right-handed alpha
Helix 6
AA6
A
128 144Right-handed alpha
Helix 7
AA7
A
145 148Right-handed 310
Helix 8
AA8
A
161 177Right-handed alpha
Helix 9
AA9
A
198 206Right-handed alpha
Helix 10
AB1
A
215 223Right-handed alpha
Helix 11
AB2
A
235 239Right-handed 310
Helix 12
AB3
A
258 272Right-handed alpha
Helix 13
AB4
A
295 314Right-handed alpha
Helix 14
AB5
B
3 16Right-handed alpha
Helix 15
AB6
B
30 44Right-handed alpha
Helix 16
AB7
B
96 98Right-handed 310
Helix 17
AB8
B
99 111Right-handed alpha
Helix 18
AB9
B
128 144Right-handed alpha
Helix 19
AC1
B
145 148Right-handed 310
Helix 20
AC2
B
161 178Right-handed alpha
Helix 21
AC3
B
198 204Right-handed alpha
Helix 22
AC4
B
211 223Right-handed alpha
Helix 23
AC5
B
235 239Right-handed 310
Helix 24
AC6
B
258 272Right-handed alpha
Helix 25
AC7
B
295 314Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6I8F.

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
113 118anti-parallel
Strand 4
A
80 86parallel
Strand 5
A
150 160parallel
Strand 6
A
184 188parallel
Strand 7
A
248 255parallel
Strand 8
A
276 285parallel
Strand 9
B
276 285anti-parallel
Strand 10
B
248 255parallel
Strand 11
B
184 188parallel
Strand 12
B
150 160parallel
Strand 13
B
80 86parallel
Strand 14
B
113 118parallel
Strand 15
B
64 71anti-parallel
Strand 16
B
52 59anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il