Analysis of interatomic Contacts of Structural Units in PDB entry:
6I8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I8H entry

There are 2 chains in PDB entry 6I8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3ILE 620
B
 GLN 3SER 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 6I8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
10 24Right-handed alpha
Helix 3
AA3
A
25 27Right-handed 310
Helix 4
AA4
A
48 52Right-handed 310
Helix 5
AA5
A
87 98Right-handed alpha
Helix 6
AA6
A
99 101Right-handed 310
Helix 7
AA7
A
102 113Right-handed alpha
Helix 8
AA8
A
123 140Right-handed alpha
Helix 9
AA9
A
141 144Right-handed 310
Helix 10
AB1
A
163 173Right-handed alpha
Helix 11
AB2
A
175 177Right-handed 310
Helix 12
AB3
A
188 195Right-handed 310
Helix 13
AB4
A
203 212Right-handed alpha
Helix 14
AB5
A
221 248Right-handed alpha
Helix 15
AB6
A
251 262Right-handed alpha
Helix 16
AB7
A
286 297Right-handed alpha
Helix 17
AB8
A
308 316Right-handed alpha
Helix 18
AB9
A
319 326Right-handed alpha
Helix 19
AC1
A
327 330Right-handed 310
Helix 20
AC2
A
336 338Right-handed 310
Helix 21
AC3
A
341 348Right-handed alpha
Helix 22
AC4
A
351 381Right-handed alpha
Helix 23
AC5
A
381 394Right-handed alpha
Helix 24
AC6
A
394 402Right-handed alpha
Helix 25
AC7
A
404 413Right-handed alpha
Helix 26
AC8
A
415 441Right-handed alpha
Helix 27
AC9
A
445 450Right-handed 310
Helix 28
AD1
A
451 476Right-handed alpha
Helix 29
AD2
A
477 482Right-handed alpha
Helix 30
AD3
A
484 489Right-handed alpha
Helix 31
AD4
A
491 507Right-handed alpha
Helix 32
AD5
A
508 510Right-handed 310
Helix 33
AD6
A
512 524Right-handed alpha
Helix 34
AD7
A
529 537Right-handed alpha
Helix 35
AD8
A
540 546Right-handed 310
Helix 36
AD9
A
547 556Right-handed alpha
Helix 37
AE1
A
563 580Right-handed alpha
Helix 38
AE2
A
584 589Right-handed alpha
Helix 39
AE3
A
593 601Right-handed alpha
Helix 40
AE4
A
603 609Right-handed alpha
Helix 41
AE5
A
612 616Right-handed 310
Helix 42
AE6
B
95 99Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6I8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
116 122parallel
Strand 4
A
152 156parallel
Strand 5
A
179 184parallel
Strand 6
A
272 276parallel
Strand 7
A
280 284anti-parallel
Strand 8
A
331 334parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
84 86anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
76 81anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
40 44anti-parallel
Strand 3
B
100 104anti-parallel
Strand 4
B
122 124anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il