Analysis of interatomic Contacts of Structural Units in PDB entry:
6I97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6I97 entry

There are 2 chains in PDB entry 6I97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 53	PHE 820
B	GLU 53	ASP 577

There are 17 helices in PDB entry 6I97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	77	Right-handed alpha
Helix 2	AA2	A	101	109	Right-handed alpha
Helix 3	AA3	A	184	190	Right-handed alpha
Helix 4	AA4	A	194	199	Right-handed alpha
Helix 5	AA5	A	200	202	Right-handed 310
Helix 6	AA6	A	252	254	Right-handed 310
Helix 7	AA7	A	730	734	Right-handed 310
Helix 8	AA8	B	65	77	Right-handed alpha
Helix 9	AA9	B	100	109	Right-handed alpha
Helix 10	AB1	B	173	175	Right-handed 310
Helix 11	AB2	B	184	190	Right-handed alpha
Helix 12	AB3	B	194	199	Right-handed alpha
Helix 13	AB4	B	200	202	Right-handed 310
Helix 14	AB5	B	252	256	Right-handed 310
Helix 15	AB6	D	265	270	Right-handed alpha
Helix 16	AB7	D	303	314	Right-handed alpha
Helix 17	AB8	E	303	312	Right-handed alpha

There are 25 sheets in PDB entry 6I97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	96	99	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	E	328	338	parallel
Strand 4	B	136	138	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	E	328	338	parallel
Strand 4	E	275	283	anti-parallel
Strand 5	E	289	298	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	126	127	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	D	329	338	parallel
Strand 3	A	142	147	parallel
Strand 4	B	79	82	anti-parallel
Strand 5	B	123	126	parallel
Strand 6	B	116	117	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	D	329	338	parallel
Strand 3	D	275	283	anti-parallel
Strand 4	D	289	298	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	170	171	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	256	263	anti-parallel
Strand 3	A	277	283	anti-parallel
Strand 4	A	232	234	parallel
Strand 5	A	237	238	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	220	221	anti-parallel

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There are 24 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	512	first strand
Strand 2	A	454	477	anti-parallel
Strand 3	A	424	447	anti-parallel
Strand 4	A	403	419	anti-parallel
Strand 5	A	357	371	anti-parallel
Strand 6	A	340	352	anti-parallel
Strand 7	A	320	331	anti-parallel
Strand 8	A	304	313	anti-parallel
Strand 9	A	294	299	anti-parallel
Strand 10	A	811	818	anti-parallel
Strand 11	A	780	787	anti-parallel
Strand 12	A	761	770	anti-parallel
Strand 13	A	736	745	anti-parallel
Strand 14	A	718	727	anti-parallel
Strand 15	A	687	702	anti-parallel
Strand 16	A	669	681	anti-parallel
Strand 17	A	641	652	anti-parallel
Strand 18	A	622	633	anti-parallel
Strand 19	A	596	607	anti-parallel
Strand 20	A	577	590	anti-parallel
Strand 21	A	551	568	anti-parallel
Strand 22	A	529	544	anti-parallel
Strand 23	A	488	507	anti-parallel
Strand 24	A	524	525	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	512	first strand
Strand 2	A	454	477	anti-parallel
Strand 3	A	488	507	anti-parallel
Strand 4	A	524	525	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	484	485	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	656	first strand
Strand 2	A	665	667	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	795	800	first strand
Strand 2	A	803	806	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	95	96	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	170	171	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	258	263	anti-parallel
Strand 3	B	277	282	anti-parallel
Strand 4	B	232	234	parallel
Strand 5	B	237	238	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	220	221	anti-parallel

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There are 24 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	525	first strand
Strand 2	B	487	512	anti-parallel
Strand 3	B	529	544	anti-parallel
Strand 4	B	551	568	anti-parallel
Strand 5	B	574	590	anti-parallel
Strand 6	B	596	607	anti-parallel
Strand 7	B	622	633	anti-parallel
Strand 8	B	640	652	anti-parallel
Strand 9	B	670	681	anti-parallel
Strand 10	B	688	700	anti-parallel
Strand 11	B	718	727	anti-parallel
Strand 12	B	736	745	anti-parallel
Strand 13	B	761	771	anti-parallel
Strand 14	B	780	787	anti-parallel
Strand 15	B	811	818	anti-parallel
Strand 16	B	294	299	anti-parallel
Strand 17	B	304	313	anti-parallel
Strand 18	B	320	331	anti-parallel
Strand 19	B	340	352	anti-parallel
Strand 20	B	357	371	anti-parallel
Strand 21	B	404	419	anti-parallel
Strand 22	B	425	447	anti-parallel
Strand 23	B	454	478	anti-parallel
Strand 24	B	487	512	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	749	first strand
Strand 2	B	757	758	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	795	800	first strand
Strand 2	B	803	806	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	258	first strand
Strand 2	D	315	317	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	319	320	first strand
Strand 2	D	325	326	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	258	first strand
Strand 2	E	315	317	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	319	321	first strand
Strand 2	E	324	326	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6I97

Analysis of interatomic Contacts of Structural Units in PDB entry:
6I97