Analysis of interatomic Contacts of Structural Units in PDB entry:
6I99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6I99 entry

There are 2 chains in PDB entry 6I99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 406GLU 671
B
 GLU 411GLU 671
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6I99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
413 415Right-handed 310
Helix 2
AA2
A
453 463Right-handed alpha
Helix 3
AA3
A
496 505Right-handed alpha
Helix 4
AA4
A
506 508Right-handed 310
Helix 5
AA5
A
509 529Right-handed alpha
Helix 6
AA6
A
538 540Right-handed 310
Helix 7
AA7
A
575 579Right-handed 310
Helix 8
AA8
A
580 585Right-handed alpha
Helix 9
AA9
A
592 607Right-handed alpha
Helix 10
AB1
A
617 627Right-handed alpha
Helix 11
AB2
A
638 648Right-handed alpha
Helix 12
AB3
A
652 656Right-handed 310
Helix 13
AB4
A
658 667Right-handed alpha
Helix 14
AB5
A
668 670Right-handed 310
Helix 15
AB6
B
413 415Right-handed 310
Helix 16
AB7
B
453 467Right-handed alpha
Helix 17
AB8
B
496 505Right-handed alpha
Helix 18
AB9
B
506 508Right-handed 310
Helix 19
AC1
B
509 530Right-handed alpha
Helix 20
AC2
B
538 540Right-handed 310
Helix 21
AC3
B
575 579Right-handed 310
Helix 22
AC4
B
580 585Right-handed alpha
Helix 23
AC5
B
592 607Right-handed alpha
Helix 24
AC6
B
617 627Right-handed alpha
Helix 25
AC7
B
638 648Right-handed alpha
Helix 26
AC8
B
652 656Right-handed 310
Helix 27
AC9
B
658 667Right-handed alpha
Helix 28
AD1
B
668 670Right-handed 310
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There are 8 sheets in PDB entry 6I99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 425first strand
Strand 2
A
430 436anti-parallel
Strand 3
A
440 447anti-parallel
Strand 4
A
485 490anti-parallel
Strand 5
A
475 479anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 534first strand
Strand 2
A
558 560anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
550 552anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 568first strand
Strand 2
A
588 590anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 425first strand
Strand 2
B
430 436anti-parallel
Strand 3
B
440 447anti-parallel
Strand 4
B
485 490anti-parallel
Strand 5
B
475 479anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
532 534first strand
Strand 2
B
558 560anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 544first strand
Strand 2
B
550 552anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
566 568first strand
Strand 2
B
588 590anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il