Analysis of interatomic Contacts of Structural Units in PDB entry:
6IAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IAD entry

There is 1 chain in PDB entry 6IAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 72LEU 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6IAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 144Right-handed alpha
Helix 2
AA2
A
159 163Right-handed 310
Helix 3
AA3
A
164 181Right-handed alpha
Helix 4
AA4
A
186 195Right-handed alpha
Helix 5
AA5
A
214 225Right-handed alpha
Helix 6
AA6
A
237 244Right-handed alpha
Helix 7
AA7
A
249 262Right-handed alpha
Helix 8
AA8
A
279 293Right-handed alpha
Helix 9
AA9
A
312 320Right-handed alpha
Helix 10
AB1
A
327 342Right-handed alpha
Helix 11
AB2
A
356 358Right-handed 310
Helix 12
AB3
A
368 381Right-handed alpha
Helix 13
AB4
A
386 391Right-handed alpha
Helix 14
AB5
A
391 400Right-handed alpha
Helix 15
AB6
A
404 406Right-handed 310
Helix 16
AB7
A
484 500Right-handed alpha
Helix 17
AB8
A
511 513Right-handed 310
Helix 18
AB9
A
514 521Right-handed alpha
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There are 4 sheets in PDB entry 6IAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
468 470anti-parallel
Strand 3
A
477 478anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
150 156parallel
Strand 3
A
200 208parallel
Strand 4
A
228 234parallel
Strand 5
A
266 271parallel
Strand 6
A
300 303parallel
Strand 7
A
347 348parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
360 362anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 417first strand
Strand 2
A
420 429anti-parallel
Strand 3
A
434 443anti-parallel
Strand 4
A
456 464anti-parallel
Strand 5
A
505 508parallel
Strand 6
A
529 533anti-parallel
Strand 7
A
524 526anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il