Analysis of interatomic Contacts of Structural Units in PDB entry:
6IB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IB8 entry

There are 3 chains in PDB entry 6IB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 265
B
 GLY -3LYS 266
C
 ASN 428GLY 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6IB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 24Right-handed alpha
Helix 2
AA2
A
27 32Right-handed alpha
Helix 3
AA3
A
42 59Right-handed alpha
Helix 4
AA4
A
88 94Right-handed alpha
Helix 5
AA5
A
161 163Right-handed 310
Helix 6
AA6
A
164 177Right-handed alpha
Helix 7
AA7
A
187 197Right-handed alpha
Helix 8
AA8
A
209 223Right-handed alpha
Helix 9
AA9
A
235 240Right-handed alpha
Helix 10
AB1
A
246 265Right-handed alpha
Helix 11
AB2
B
2 25Right-handed alpha
Helix 12
AB3
B
26 29Right-handed 310
Helix 13
AB4
B
42 59Right-handed alpha
Helix 14
AB5
B
88 95Right-handed alpha
Helix 15
AB6
B
161 163Right-handed 310
Helix 16
AB7
B
164 177Right-handed alpha
Helix 17
AB8
B
187 197Right-handed alpha
Helix 18
AB9
B
209 223Right-handed alpha
Helix 19
AC1
B
235 240Right-handed alpha
Helix 20
AC2
B
246 258Right-handed alpha
Helix 21
AC3
B
259 261Right-handed 310
Helix 22
AC4
C
431 436Right-handed alpha
Helix 23
AC5
C
441 451Right-handed alpha
Helix 24
AC6
C
455 461Right-handed alpha
Helix 25
AC7
C
463 468Right-handed 310
Helix 26
AC8
C
474 490Right-handed alpha
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There are 5 sheets in PDB entry 6IB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
76 87parallel
Strand 4
A
100 107anti-parallel
Strand 5
A
110 118anti-parallel
Strand 6
A
123 128anti-parallel
Strand 7
A
132 135anti-parallel
Strand 8
A
138 139anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
152 155parallel
Strand 3
A
202 205parallel
Strand 4
A
242 245anti-parallel
Strand 5
A
226 228anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
38 41anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
62 66anti-parallel
Strand 3
B
76 87parallel
Strand 4
B
100 107anti-parallel
Strand 5
B
110 118anti-parallel
Strand 6
B
123 128anti-parallel
Strand 7
B
132 135anti-parallel
Strand 8
B
138 139anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
152 155parallel
Strand 3
B
202 205parallel
Strand 4
B
242 245anti-parallel
Strand 5
B
226 228anti-parallel
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