Analysis of interatomic Contacts of Structural Units in PDB entry:
6IBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IBG entry

There are 3 chains in PDB entry 6IBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 26ALA 437
B
 LEU 26ALA 437
C
 LEU 26GLN 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 6IBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 50Right-handed 310
Helix 2
AA2
A
51 63Right-handed alpha
Helix 3
AA3
A
65 81Right-handed alpha
Helix 4
AA4
A
92 107Right-handed alpha
Helix 5
AA5
A
115 132Right-handed alpha
Helix 6
AA6
A
157 159Right-handed 310
Helix 7
AA7
A
215 217Right-handed 310
Helix 8
AA8
A
218 242Right-handed alpha
Helix 9
AA9
A
256 272Right-handed alpha
Helix 10
AB1
A
273 276Right-handed 310
Helix 11
AB2
A
297 311Right-handed alpha
Helix 12
AB3
A
329 356Right-handed alpha
Helix 13
AB4
A
356 362Right-handed alpha
Helix 14
AB5
A
383 398Right-handed alpha
Helix 15
AB6
A
403 414Right-handed alpha
Helix 16
AB7
A
416 424Right-handed alpha
Helix 17
AB8
A
427 434Right-handed alpha
Helix 18
AB9
B
47 50Right-handed 310
Helix 19
AC1
B
51 63Right-handed alpha
Helix 20
AC2
B
65 81Right-handed alpha
Helix 21
AC3
B
92 107Right-handed alpha
Helix 22
AC4
B
115 132Right-handed alpha
Helix 23
AC5
B
157 159Right-handed 310
Helix 24
AC6
B
215 217Right-handed 310
Helix 25
AC7
B
218 242Right-handed alpha
Helix 26
AC8
B
256 272Right-handed alpha
Helix 27
AC9
B
273 276Right-handed 310
Helix 28
AD1
B
297 311Right-handed alpha
Helix 29
AD2
B
329 356Right-handed alpha
Helix 30
AD3
B
356 362Right-handed alpha
Helix 31
AD4
B
383 398Right-handed alpha
Helix 32
AD5
B
403 414Right-handed alpha
Helix 33
AD6
B
416 424Right-handed alpha
Helix 34
AD7
B
427 435Right-handed alpha
Helix 35
AD8
C
47 50Right-handed 310
Helix 36
AD9
C
51 63Right-handed alpha
Helix 37
AE1
C
65 81Right-handed alpha
Helix 38
AE2
C
92 107Right-handed alpha
Helix 39
AE3
C
115 132Right-handed alpha
Helix 40
AE4
C
157 159Right-handed 310
Helix 41
AE5
C
215 217Right-handed 310
Helix 42
AE6
C
218 242Right-handed alpha
Helix 43
AE7
C
256 272Right-handed alpha
Helix 44
AE8
C
273 276Right-handed 310
Helix 45
AE9
C
297 311Right-handed alpha
Helix 46
AF1
C
329 356Right-handed alpha
Helix 47
AF2
C
356 362Right-handed alpha
Helix 48
AF3
C
383 398Right-handed alpha
Helix 49
AF4
C
403 414Right-handed alpha
Helix 50
AF5
C
416 424Right-handed alpha
Helix 51
AF6
C
427 434Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 6IBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 156first strand
Strand 2
A
133 142anti-parallel
Strand 3
A
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 166first strand
Strand 2
A
172 180anti-parallel
Strand 3
A
187 194anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
244 248anti-parallel
Strand 3
B
277 280parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 156first strand
Strand 2
B
133 142anti-parallel
Strand 3
B
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 166first strand
Strand 2
B
172 180anti-parallel
Strand 3
B
187 194anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 287first strand
Strand 2
B
244 248anti-parallel
Strand 3
C
277 280parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 87first strand
Strand 2
C
373 375anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 156first strand
Strand 2
C
133 142anti-parallel
Strand 3
C
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 166first strand
Strand 2
C
172 180anti-parallel
Strand 3
C
187 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 247first strand
Strand 2
C
284 287anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il