Analysis of interatomic Contacts of Structural Units in PDB entry:
6IC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IC8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 6IC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1206LEU 1351
B
 ASN 1206LYS 1350
C
 TYR 3TYR 3
C
 PRO 5TYR 10
C
 PRO 12THR 13
D
 PRO 5TYR 10
D
 PRO 12THR 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6IC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1232 1239Right-handed 310
Helix 2
AA2
A
1250 1265Right-handed alpha
Helix 3
AA3
A
1278 1296Right-handed alpha
Helix 4
AA4
A
1323 1327Right-handed 310
Helix 5
AA5
B
1234 1239Right-handed alpha
Helix 6
AA6
B
1250 1265Right-handed alpha
Helix 7
AA7
B
1278 1296Right-handed alpha
Helix 8
AA8
B
1323 1327Right-handed 310
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There are 2 sheets in PDB entry 6IC8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
A
1242 1249anti-parallel
Strand 3
A
1298 1301anti-parallel
Strand 4
A
1308 1316anti-parallel
Strand 5
A
1341 1349anti-parallel
Strand 6
A
1267 1276anti-parallel
Strand 7
A
1219 1229anti-parallel
Strand 8
A
1209 1215anti-parallel
Strand 9
A
1242 1249parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
B
1242 1249anti-parallel
Strand 3
B
1298 1301anti-parallel
Strand 4
B
1308 1316anti-parallel
Strand 5
B
1341 1349anti-parallel
Strand 6
B
1267 1276anti-parallel
Strand 7
B
1219 1229anti-parallel
Strand 8
B
1209 1215anti-parallel
Strand 9
B
1242 1249parallel
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