Analysis of interatomic Contacts of Structural Units in PDB entry:
6ICI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ICI entry

There is 1 chain in PDB entry 6ICI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10LEU 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 6ICI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
24 39Right-handed alpha
Helix 3
AA3
A
48 57Right-handed alpha
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
75 82Right-handed 310
Helix 6
AA6
A
95 108Right-handed alpha
Helix 7
AA7
A
130 140Right-handed alpha
Helix 8
AA8
A
141 146Right-handed alpha
Helix 9
AA9
A
159 173Right-handed alpha
Helix 10
AB1
A
209 214Right-handed 310
Helix 11
AB2
A
223 227Right-handed 310
Helix 12
AB3
A
254 260Right-handed alpha
Helix 13
AB4
A
272 283Right-handed alpha
Helix 14
AB5
A
304 311Right-handed alpha
Helix 15
AB6
A
320 325Right-handed alpha
Helix 16
AB7
A
326 330Right-handed 310
Helix 17
AB8
A
331 347Right-handed alpha
Helix 18
AB9
A
397 400Right-handed 310
Helix 19
AC1
A
404 408Right-handed 310
Helix 20
AC2
A
409 430Right-handed alpha
Helix 21
AC3
A
433 446Right-handed alpha
Helix 22
AC4
A
447 451Right-handed 310
Helix 23
AC5
A
459 463Right-handed 310
Helix 24
AC6
A
466 470Right-handed 310
Helix 25
AC7
A
480 486Right-handed 310
Helix 26
AC8
A
521 533Right-handed alpha
Helix 27
AC9
A
544 548Right-handed 310
Helix 28
AD1
A
550 561Right-handed alpha
Helix 29
AD2
A
574 591Right-handed alpha
Helix 30
AD3
A
597 603Right-handed alpha
Helix 31
AD4
A
608 624Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6ICI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
111 115parallel
Strand 3
A
88 92parallel
Strand 4
A
218 221parallel
Strand 5
A
389 395parallel
Strand 6
A
381 386anti-parallel
Strand 7
A
488 489parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
156 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
201 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
373 377anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 293first strand
Strand 2
A
296 303anti-parallel
Strand 3
A
243 250anti-parallel
Strand 4
A
366 370anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il