Analysis of interatomic Contacts of Structural Units in PDB entry:
6ICL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ICL entry

There is 1 chain in PDB entry 6ICL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6GLU 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 6ICL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed 310
Helix 2
AA2
A
25 31Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
166 175Right-handed alpha
Helix 5
AA5
A
179 184Right-handed alpha
Helix 6
AA6
A
281 302Right-handed alpha
Helix 7
AA7
A
315 317Right-handed 310
Helix 8
AA8
A
318 338Right-handed alpha
Helix 9
AA9
A
338 348Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6ICL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
128 132anti-parallel
Strand 3
A
119 125anti-parallel
Strand 4
A
56 61anti-parallel
Strand 5
A
46 53anti-parallel
Strand 6
A
39 43anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
93 94anti-parallel
Strand 4
A
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
266 276anti-parallel
Strand 3
A
161 163anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
266 276anti-parallel
Strand 3
A
252 263anti-parallel
Strand 4
A
239 246anti-parallel
Strand 5
A
228 235anti-parallel
Strand 6
A
207 212anti-parallel
Strand 7
A
201 204anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il