Analysis of interatomic Contacts of Structural Units in PDB entry:
6IDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IDE entry

There are 4 chains in PDB entry 6IDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PRO 238
B
 PRO 2THR 236
C
 A 1 T 18
D
 A 1 T 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6IDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 16Right-handed alpha
Helix 2
AA2
A
33 41Right-handed alpha
Helix 3
AA3
A
44 49Right-handed 310
Helix 4
AA4
A
52 56Right-handed 310
Helix 5
AA5
A
58 62Right-handed 310
Helix 6
AA6
A
63 78Right-handed alpha
Helix 7
AA7
A
127 137Right-handed alpha
Helix 8
AA8
A
157 169Right-handed alpha
Helix 9
AA9
A
172 181Right-handed alpha
Helix 10
AB1
A
190 198Right-handed alpha
Helix 11
AB2
A
202 213Right-handed alpha
Helix 12
AB3
A
214 218Right-handed 310
Helix 13
AB4
A
220 224Right-handed 310
Helix 14
AB5
B
6 14Right-handed alpha
Helix 15
AB6
B
33 40Right-handed alpha
Helix 16
AB7
B
44 49Right-handed 310
Helix 17
AB8
B
52 56Right-handed 310
Helix 18
AB9
B
58 62Right-handed 310
Helix 19
AC1
B
63 78Right-handed alpha
Helix 20
AC2
B
122 124Right-handed 310
Helix 21
AC3
B
127 135Right-handed alpha
Helix 22
AC4
B
157 169Right-handed alpha
Helix 23
AC5
B
172 181Right-handed alpha
Helix 24
AC6
B
183 198Right-handed alpha
Helix 25
AC7
B
202 213Right-handed alpha
Helix 26
AC8
B
214 218Right-handed 310
Helix 27
AC9
B
220 224Right-handed 310
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There are 2 sheets in PDB entry 6IDE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
111 120anti-parallel
Strand 4
A
94 105anti-parallel
Strand 5
A
80 88anti-parallel
Strand 6
A
228 235anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
111 120anti-parallel
Strand 4
B
94 105anti-parallel
Strand 5
B
81 88anti-parallel
Strand 6
B
228 232anti-parallel
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