Analysis of interatomic Contacts of Structural Units in PDB entry:
6IDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IDV entry

There are 4 chains in PDB entry 6IDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 51ALA 170
A
 HIS 172ALA 483
B
 GLY 52ALA 170
B
 HIS 172ALA 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6IDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 66Right-handed 310
Helix 2
AA2
A
67 84Right-handed alpha
Helix 3
AA3
A
87 89Right-handed 310
Helix 4
AA4
A
129 133Right-handed 310
Helix 5
AA5
A
134 144Right-handed alpha
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
188 202Right-handed alpha
Helix 8
AA8
A
215 220Right-handed 310
Helix 9
AA9
A
264 276Right-handed alpha
Helix 10
AB1
A
282 295Right-handed alpha
Helix 11
AB2
A
306 312Right-handed 310
Helix 12
AB3
A
313 318Right-handed alpha
Helix 13
AB4
A
320 324Right-handed 310
Helix 14
AB5
A
345 358Right-handed alpha
Helix 15
AB6
A
362 395Right-handed alpha
Helix 16
AB7
A
398 405Right-handed alpha
Helix 17
AB8
A
416 432Right-handed alpha
Helix 18
AB9
A
436 440Right-handed 310
Helix 19
AC1
A
441 451Right-handed alpha
Helix 20
AC2
A
454 466Right-handed alpha
Helix 21
AC3
A
472 476Right-handed 310
Helix 22
AC4
B
64 66Right-handed 310
Helix 23
AC5
B
67 84Right-handed alpha
Helix 24
AC6
B
87 89Right-handed 310
Helix 25
AC7
B
129 133Right-handed 310
Helix 26
AC8
B
134 144Right-handed alpha
Helix 27
AC9
B
145 149Right-handed 310
Helix 28
AD1
B
188 201Right-handed alpha
Helix 29
AD2
B
215 220Right-handed 310
Helix 30
AD3
B
264 276Right-handed alpha
Helix 31
AD4
B
282 295Right-handed alpha
Helix 32
AD5
B
306 312Right-handed 310
Helix 33
AD6
B
313 318Right-handed alpha
Helix 34
AD7
B
320 324Right-handed 310
Helix 35
AD8
B
345 358Right-handed alpha
Helix 36
AD9
B
362 395Right-handed alpha
Helix 37
AE1
B
398 404Right-handed alpha
Helix 38
AE2
B
416 432Right-handed alpha
Helix 39
AE3
B
436 440Right-handed 310
Helix 40
AE4
B
441 451Right-handed alpha
Helix 41
AE5
B
454 466Right-handed alpha
Helix 42
AE6
B
472 476Right-handed 310
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There are 6 sheets in PDB entry 6IDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
54 60parallel
Strand 3
A
164 170parallel
Strand 4
A
206 212parallel
Strand 5
A
230 234parallel
Strand 6
A
301 304anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
177 178anti-parallel
Strand 3
A
186 187anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
243 245anti-parallel
Strand 3
A
341 342anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
54 60parallel
Strand 3
B
164 170parallel
Strand 4
B
206 212parallel
Strand 5
B
230 234parallel
Strand 6
B
301 304anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
177 178anti-parallel
Strand 3
B
186 187anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
243 245anti-parallel
Strand 3
B
341 342anti-parallel
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