Analysis of interatomic Contacts of Structural Units in PDB entry:
6IDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IDY entry

There are 3 chains in PDB entry 6IDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 14HIS 440
B
 LEU 14HIS 440
C
 ASP 13HIS 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 6IDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
30 48Right-handed alpha
Helix 3
AA3
A
62 74Right-handed alpha
Helix 4
AA4
A
75 77Right-handed 310
Helix 5
AA5
A
80 91Right-handed alpha
Helix 6
AA6
A
95 104Right-handed alpha
Helix 7
AA7
A
108 112Right-handed 310
Helix 8
AA8
A
139 146Right-handed alpha
Helix 9
AA9
A
172 179Right-handed alpha
Helix 10
AB1
A
180 187Right-handed 310
Helix 11
AB2
A
197 202Right-handed 310
Helix 12
AB3
A
204 224Right-handed alpha
Helix 13
AB4
A
234 246Right-handed alpha
Helix 14
AB5
A
247 251Right-handed 310
Helix 15
AB6
A
282 288Right-handed alpha
Helix 16
AB7
A
292 300Right-handed alpha
Helix 17
AB8
A
301 303Right-handed 310
Helix 18
AB9
A
346 350Right-handed alpha
Helix 19
AC1
A
353 357Right-handed 310
Helix 20
AC2
A
362 366Right-handed 310
Helix 21
AC3
A
367 380Right-handed alpha
Helix 22
AC4
A
385 389Right-handed 310
Helix 23
AC5
A
390 397Right-handed alpha
Helix 24
AC6
A
404 413Right-handed alpha
Helix 25
AC7
A
413 425Right-handed alpha
Helix 26
AC8
A
436 440Right-handed 310
Helix 27
AC9
B
15 25Right-handed alpha
Helix 28
AD1
B
30 50Right-handed alpha
Helix 29
AD2
B
62 74Right-handed alpha
Helix 30
AD3
B
80 91Right-handed alpha
Helix 31
AD4
B
95 104Right-handed alpha
Helix 32
AD5
B
105 112Right-handed 310
Helix 33
AD6
B
139 146Right-handed alpha
Helix 34
AD7
B
172 179Right-handed alpha
Helix 35
AD8
B
180 187Right-handed 310
Helix 36
AD9
B
197 202Right-handed 310
Helix 37
AE1
B
204 224Right-handed alpha
Helix 38
AE2
B
234 246Right-handed alpha
Helix 39
AE3
B
247 251Right-handed 310
Helix 40
AE4
B
282 288Right-handed alpha
Helix 41
AE5
B
292 300Right-handed alpha
Helix 42
AE6
B
346 350Right-handed alpha
Helix 43
AE7
B
353 357Right-handed 310
Helix 44
AE8
B
362 366Right-handed 310
Helix 45
AE9
B
367 380Right-handed alpha
Helix 46
AF1
B
385 389Right-handed 310
Helix 47
AF2
B
390 397Right-handed alpha
Helix 48
AF3
B
404 425Right-handed alpha
Helix 49
AF4
C
15 25Right-handed alpha
Helix 50
AF5
C
30 49Right-handed alpha
Helix 51
AF6
C
62 75Right-handed alpha
Helix 52
AF7
C
80 91Right-handed alpha
Helix 53
AF8
C
95 104Right-handed alpha
Helix 54
AF9
C
105 112Right-handed 310
Helix 55
AG1
C
139 146Right-handed alpha
Helix 56
AG2
C
172 178Right-handed alpha
Helix 57
AG3
C
180 187Right-handed 310
Helix 58
AG4
C
204 224Right-handed alpha
Helix 59
AG5
C
234 246Right-handed alpha
Helix 60
AG6
C
247 251Right-handed 310
Helix 61
AG7
C
282 288Right-handed alpha
Helix 62
AG8
C
292 300Right-handed alpha
Helix 63
AG9
C
301 303Right-handed 310
Helix 64
AH1
C
346 350Right-handed alpha
Helix 65
AH2
C
353 357Right-handed 310
Helix 66
AH3
C
362 366Right-handed 310
Helix 67
AH4
C
367 380Right-handed alpha
Helix 68
AH5
C
385 389Right-handed 310
Helix 69
AH6
C
390 397Right-handed alpha
Helix 70
AH7
C
404 413Right-handed alpha
Helix 71
AH8
C
413 425Right-handed alpha
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There are 3 sheets in PDB entry 6IDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
161 166parallel
Strand 4
A
227 232parallel
Strand 5
A
253 259parallel
Strand 6
A
310 314parallel
Strand 7
A
341 345parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
190 195anti-parallel
Strand 3
B
161 166parallel
Strand 4
B
227 232parallel
Strand 5
B
253 259parallel
Strand 6
B
310 314parallel
Strand 7
B
341 345parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 148first strand
Strand 2
C
190 195anti-parallel
Strand 3
C
161 166parallel
Strand 4
C
227 232parallel
Strand 5
C
253 259parallel
Strand 6
C
310 314parallel
Strand 7
C
341 345parallel
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