Analysis of interatomic Contacts of Structural Units in PDB entry:
6IE0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IE0 entry

There are 4 chains in PDB entry 6IE0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ASN 346
B	SER 0	ASN 346
C	SER 0	ASN 346
D	SER 0	PRO 277

There are 52 helices in PDB entry 6IE0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	47	Right-handed alpha
Helix 2	AA2	A	106	110	Right-handed 310
Helix 3	AA3	A	144	150	Right-handed alpha
Helix 4	AA4	A	150	163	Right-handed alpha
Helix 5	AA5	A	178	191	Right-handed alpha
Helix 6	AA6	A	202	212	Right-handed alpha
Helix 7	AA7	A	224	234	Right-handed alpha
Helix 8	AA8	A	246	256	Right-handed alpha
Helix 9	AA9	A	276	283	Right-handed alpha
Helix 10	AB1	A	296	305	Right-handed alpha
Helix 11	AB2	A	310	314	Right-handed alpha
Helix 12	AB3	A	323	328	Right-handed alpha
Helix 13	AB4	A	328	335	Right-handed alpha
Helix 14	AB5	B	38	47	Right-handed alpha
Helix 15	AB6	B	106	110	Right-handed 310
Helix 16	AB7	B	144	149	Right-handed alpha
Helix 17	AB8	B	150	163	Right-handed alpha
Helix 18	AB9	B	178	191	Right-handed alpha
Helix 19	AC1	B	202	213	Right-handed alpha
Helix 20	AC2	B	224	234	Right-handed alpha
Helix 21	AC3	B	246	256	Right-handed alpha
Helix 22	AC4	B	276	283	Right-handed alpha
Helix 23	AC5	B	296	305	Right-handed alpha
Helix 24	AC6	B	310	314	Right-handed alpha
Helix 25	AC7	B	323	328	Right-handed alpha
Helix 26	AC8	B	328	335	Right-handed alpha
Helix 27	AC9	C	38	47	Right-handed alpha
Helix 28	AD1	C	106	110	Right-handed 310
Helix 29	AD2	C	144	149	Right-handed alpha
Helix 30	AD3	C	150	163	Right-handed alpha
Helix 31	AD4	C	178	192	Right-handed alpha
Helix 32	AD5	C	202	212	Right-handed alpha
Helix 33	AD6	C	224	234	Right-handed alpha
Helix 34	AD7	C	246	256	Right-handed alpha
Helix 35	AD8	C	276	283	Right-handed alpha
Helix 36	AD9	C	296	306	Right-handed alpha
Helix 37	AE1	C	310	314	Right-handed alpha
Helix 38	AE2	C	323	328	Right-handed alpha
Helix 39	AE3	C	328	335	Right-handed alpha
Helix 40	AE4	D	38	47	Right-handed alpha
Helix 41	AE5	D	106	110	Right-handed 310
Helix 42	AE6	D	144	150	Right-handed alpha
Helix 43	AE7	D	150	163	Right-handed alpha
Helix 44	AE8	D	178	191	Right-handed alpha
Helix 45	AE9	D	202	212	Right-handed alpha
Helix 46	AF1	D	224	234	Right-handed alpha
Helix 47	AF2	D	246	256	Right-handed alpha
Helix 48	AF3	D	276	283	Right-handed alpha
Helix 49	AF4	D	296	305	Right-handed alpha
Helix 50	AF5	D	310	314	Right-handed alpha
Helix 51	AF6	D	323	328	Right-handed alpha
Helix 52	AF7	D	328	335	Right-handed alpha

There are 20 sheets in PDB entry 6IE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	17	first strand
Strand 2	A	1	8	anti-parallel
Strand 3	A	66	67	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	26	35	anti-parallel
Strand 3	A	72	79	anti-parallel
Strand 4	A	91	94	anti-parallel
Strand 5	A	136	138	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	26	35	anti-parallel
Strand 3	A	340	344	anti-parallel
Strand 4	A	315	320	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	114	115	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	196	199	parallel
Strand 3	A	172	175	parallel
Strand 4	A	237	242	parallel
Strand 5	A	257	265	parallel
Strand 6	A	286	289	parallel
Strand 7	C	286	289	anti-parallel
Strand 8	C	257	265	parallel
Strand 9	C	237	242	parallel
Strand 10	C	172	175	parallel
Strand 11	C	196	199	parallel
Strand 12	C	215	217	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	C	273	275	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	17	first strand
Strand 2	B	1	8	anti-parallel
Strand 3	B	66	67	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	26	35	anti-parallel
Strand 3	B	72	79	anti-parallel
Strand 4	B	91	94	anti-parallel
Strand 5	B	136	138	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	26	35	anti-parallel
Strand 3	B	340	344	anti-parallel
Strand 4	B	315	320	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	114	115	anti-parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	196	199	parallel
Strand 3	B	172	175	parallel
Strand 4	B	237	242	parallel
Strand 5	B	257	265	parallel
Strand 6	B	286	289	parallel
Strand 7	D	286	289	anti-parallel
Strand 8	D	257	265	parallel
Strand 9	D	237	242	parallel
Strand 10	D	172	175	parallel
Strand 11	D	196	199	parallel
Strand 12	D	215	217	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	D	273	275	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	17	first strand
Strand 2	C	1	8	anti-parallel
Strand 3	C	66	67	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	26	35	anti-parallel
Strand 3	C	72	79	anti-parallel
Strand 4	C	91	94	anti-parallel
Strand 5	C	136	138	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	26	35	anti-parallel
Strand 3	C	340	344	anti-parallel
Strand 4	C	315	320	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	114	115	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	17	first strand
Strand 2	D	1	8	anti-parallel
Strand 3	D	66	67	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	26	35	anti-parallel
Strand 3	D	72	79	anti-parallel
Strand 4	D	91	94	anti-parallel
Strand 5	D	136	138	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	26	35	anti-parallel
Strand 3	D	340	344	anti-parallel
Strand 4	D	315	320	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IE0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IE0