Analysis of interatomic Contacts of Structural Units in PDB entry:
6IER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IER entry

There is 1 chain in PDB entry 6IER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 35LEU 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6IER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 48Right-handed alpha
Helix 2
AA2
A
54 61Right-handed alpha
Helix 3
AA3
A
76 92Right-handed alpha
Helix 4
AA4
A
101 106Right-handed alpha
Helix 5
AA5
A
113 130Right-handed alpha
Helix 6
AA6
A
144 150Right-handed alpha
Helix 7
AA7
A
151 157Right-handed 310
Helix 8
AA8
A
158 174Right-handed alpha
Helix 9
AA9
A
175 177Right-handed 310
Helix 10
AB1
A
187 193Right-handed alpha
Helix 11
AB2
A
195 216Right-handed alpha
Helix 12
AB3
A
223 227Right-handed 310
Helix 13
AB4
A
228 251Right-handed alpha
Helix 14
AB5
A
274 283Right-handed alpha
Helix 15
AB6
A
283 289Right-handed alpha
Helix 16
AB7
A
328 339Right-handed alpha
Helix 17
AB8
A
356 377Right-handed alpha
Helix 18
AB9
A
394 398Right-handed 310
Helix 19
AC1
A
418 431Right-handed alpha
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There are 3 sheets in PDB entry 6IER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
95 99parallel
Strand 3
A
133 139parallel
Strand 4
A
179 184parallel
Strand 5
A
257 262parallel
Strand 6
A
294 297parallel
Strand 7
A
345 349parallel
Strand 8
A
381 386parallel
Strand 9
A
37 41parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
301 304parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
415 417anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il