Analysis of interatomic Contacts of Structural Units in PDB entry:
6IF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IF8 entry

There are 4 chains in PDB entry 6IF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -5LEU 230
B
 GLY -6LEU 230
C
 ALA -5LEU 230
D
 GLY -6LEU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6IF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 19Right-handed alpha
Helix 2
AA2
A
51 67Right-handed alpha
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
122 132Right-handed alpha
Helix 5
AA5
A
155 166Right-handed alpha
Helix 6
AA6
A
175 187Right-handed alpha
Helix 7
AA7
A
203 230Right-handed alpha
Helix 8
AA8
B
9 19Right-handed alpha
Helix 9
AA9
B
51 67Right-handed alpha
Helix 10
AB1
B
102 106Right-handed 310
Helix 11
AB2
B
122 131Right-handed alpha
Helix 12
AB3
B
155 166Right-handed alpha
Helix 13
AB4
B
175 187Right-handed alpha
Helix 14
AB5
B
203 230Right-handed alpha
Helix 15
AB6
C
9 19Right-handed alpha
Helix 16
AB7
C
51 67Right-handed alpha
Helix 17
AB8
C
102 106Right-handed 310
Helix 18
AB9
C
122 132Right-handed alpha
Helix 19
AC1
C
155 166Right-handed alpha
Helix 20
AC2
C
175 187Right-handed alpha
Helix 21
AC3
C
203 230Right-handed alpha
Helix 22
AC4
D
9 19Right-handed alpha
Helix 23
AC5
D
50 67Right-handed alpha
Helix 24
AC6
D
102 106Right-handed 310
Helix 25
AC7
D
122 131Right-handed alpha
Helix 26
AC8
D
155 166Right-handed alpha
Helix 27
AC9
D
175 187Right-handed alpha
Helix 28
AD1
D
203 230Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6IF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 28first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
70 79parallel
Strand 6
A
169 173anti-parallel
Strand 7
A
143 148parallel
Strand 8
A
89 97parallel
Strand 9
A
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 28first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
70 79parallel
Strand 6
A
190 199parallel
Strand 7
A
89 97anti-parallel
Strand 8
A
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 28first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
2 7parallel
Strand 5
B
70 79parallel
Strand 6
B
169 173anti-parallel
Strand 7
B
143 148parallel
Strand 8
B
89 97parallel
Strand 9
B
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 28first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
2 7parallel
Strand 5
B
70 79parallel
Strand 6
B
190 199parallel
Strand 7
B
89 97anti-parallel
Strand 8
B
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 28first strand
Strand 2
C
31 38anti-parallel
Strand 3
C
41 47anti-parallel
Strand 4
C
2 7parallel
Strand 5
C
70 79parallel
Strand 6
C
169 173anti-parallel
Strand 7
C
143 148parallel
Strand 8
C
89 97parallel
Strand 9
C
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 28first strand
Strand 2
C
31 38anti-parallel
Strand 3
C
41 47anti-parallel
Strand 4
C
2 7parallel
Strand 5
C
70 79parallel
Strand 6
C
190 199parallel
Strand 7
C
89 97anti-parallel
Strand 8
C
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 28first strand
Strand 2
D
31 38anti-parallel
Strand 3
D
41 47anti-parallel
Strand 4
D
2 7parallel
Strand 5
D
70 79parallel
Strand 6
D
169 173anti-parallel
Strand 7
D
143 148parallel
Strand 8
D
89 97parallel
Strand 9
D
119 120anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 28first strand
Strand 2
D
31 38anti-parallel
Strand 3
D
41 47anti-parallel
Strand 4
D
2 7parallel
Strand 5
D
70 79parallel
Strand 6
D
190 199parallel
Strand 7
D
89 97anti-parallel
Strand 8
D
119 120anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il