Analysis of interatomic Contacts of Structural Units in PDB entry:
6IFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IFV entry

There are 2 chains in PDB entry 6IFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ARG 211
B
 ASP 4ARG 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6IFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
33 44Right-handed alpha
Helix 3
AA3
A
60 70Right-handed alpha
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
82 90Right-handed alpha
Helix 6
AA6
A
107 116Right-handed alpha
Helix 7
AA7
A
129 131Right-handed 310
Helix 8
AA8
A
132 143Right-handed alpha
Helix 9
AA9
A
156 163Right-handed alpha
Helix 10
AB1
A
172 181Right-handed alpha
Helix 11
AB2
A
191 193Right-handed 310
Helix 12
AB3
B
7 18Right-handed alpha
Helix 13
AB4
B
33 44Right-handed alpha
Helix 14
AB5
B
60 70Right-handed alpha
Helix 15
AB6
B
79 81Right-handed 310
Helix 16
AB7
B
82 90Right-handed alpha
Helix 17
AB8
B
107 116Right-handed alpha
Helix 18
AB9
B
129 143Right-handed alpha
Helix 19
AC1
B
156 163Right-handed alpha
Helix 20
AC2
B
172 181Right-handed alpha
Helix 21
AC3
B
191 193Right-handed 310
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There are 4 sheets in PDB entry 6IFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
195 196anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
72 76parallel
Strand 3
A
50 55parallel
Strand 4
A
121 127parallel
Strand 5
A
149 155parallel
Strand 6
A
203 210anti-parallel
Strand 7
A
182 190anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
195 196anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
72 76parallel
Strand 3
B
50 55parallel
Strand 4
B
121 127parallel
Strand 5
B
149 155parallel
Strand 6
B
203 210anti-parallel
Strand 7
B
182 190anti-parallel
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