Analysis of interatomic Contacts of Structural Units in PDB entry:
6IFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IFX entry

There are 2 chains in PDB entry 6IFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9TYR 283
B
 PRO 8TYR 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 6IFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 44Right-handed alpha
Helix 2
AA2
A
62 68Right-handed alpha
Helix 3
AA3
A
82 89Right-handed alpha
Helix 4
AA4
A
102 106Right-handed 310
Helix 5
AA5
A
107 116Right-handed alpha
Helix 6
AA6
A
129 143Right-handed alpha
Helix 7
AA7
A
156 161Right-handed alpha
Helix 8
AA8
A
186 190Right-handed 310
Helix 9
AA9
A
218 227Right-handed alpha
Helix 10
AB1
A
233 238Right-handed alpha
Helix 11
AB2
A
273 280Right-handed alpha
Helix 12
AB3
B
36 44Right-handed alpha
Helix 13
AB4
B
62 68Right-handed alpha
Helix 14
AB5
B
82 89Right-handed alpha
Helix 15
AB6
B
102 106Right-handed 310
Helix 16
AB7
B
107 115Right-handed alpha
Helix 17
AB8
B
129 143Right-handed alpha
Helix 18
AB9
B
156 161Right-handed alpha
Helix 19
AC1
B
186 190Right-handed 310
Helix 20
AC2
B
218 227Right-handed alpha
Helix 21
AC3
B
233 238Right-handed alpha
Helix 22
AC4
B
251 257Right-handed alpha
Helix 23
AC5
B
271 281Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6IFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
123 127parallel
Strand 3
A
149 155parallel
Strand 4
A
198 205anti-parallel
Strand 5
A
177 180anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
123 127parallel
Strand 3
A
149 155parallel
Strand 4
A
198 205anti-parallel
Strand 5
A
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
96 99parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
96 99parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
152 155parallel
Strand 3
B
198 205anti-parallel
Strand 4
B
177 180anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
152 155parallel
Strand 3
B
198 205anti-parallel
Strand 4
B
184 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il