Analysis of interatomic Contacts of Structural Units in PDB entry:
6IGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IGP entry

There are 3 chains in PDB entry 6IGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 9	LEU 655
B	PRO 7	LEU 655
C	PRO 7	GLU 184

There are 53 helices in PDB entry 6IGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	17	Right-handed 310
Helix 2	AA2	A	217	222	Right-handed alpha
Helix 3	AA3	A	390	394	Right-handed 310
Helix 4	AA4	A	445	454	Right-handed alpha
Helix 5	AA5	A	470	476	Right-handed alpha
Helix 6	AA6	A	483	500	Right-handed alpha
Helix 7	AA7	A	514	525	Right-handed alpha
Helix 8	AA8	A	541	549	Right-handed alpha
Helix 9	AA9	A	551	561	Right-handed alpha
Helix 10	AB1	A	566	576	Right-handed alpha
Helix 11	AB2	A	577	585	Right-handed 310
Helix 12	AB3	A	602	615	Right-handed alpha
Helix 13	AB4	A	629	635	Right-handed alpha
Helix 14	AB5	A	637	655	Right-handed alpha
Helix 15	AB6	B	10	17	Right-handed 310
Helix 16	AB7	B	390	394	Right-handed 310
Helix 17	AB8	B	445	454	Right-handed alpha
Helix 18	AB9	B	470	476	Right-handed alpha
Helix 19	AC1	B	483	500	Right-handed alpha
Helix 20	AC2	B	514	525	Right-handed alpha
Helix 21	AC3	B	541	549	Right-handed alpha
Helix 22	AC4	B	551	561	Right-handed alpha
Helix 23	AC5	B	566	576	Right-handed alpha
Helix 24	AC6	B	577	585	Right-handed 310
Helix 25	AC7	B	602	615	Right-handed alpha
Helix 26	AC8	B	629	635	Right-handed alpha
Helix 27	AC9	B	637	655	Right-handed alpha
Helix 28	AD1	C	10	17	Right-handed 310
Helix 29	AD2	C	390	394	Right-handed 310
Helix 30	AD3	C	445	454	Right-handed alpha
Helix 31	AD4	C	470	476	Right-handed alpha
Helix 32	AD5	C	483	500	Right-handed alpha
Helix 33	AD6	C	514	525	Right-handed alpha
Helix 34	AD7	C	541	549	Right-handed alpha
Helix 35	AD8	C	551	561	Right-handed alpha
Helix 36	AD9	C	566	576	Right-handed alpha
Helix 37	AE1	C	577	585	Right-handed 310
Helix 38	AE2	C	602	615	Right-handed alpha
Helix 39	AE3	C	629	635	Right-handed alpha
Helix 40	AE4	C	637	655	Right-handed alpha
Helix 41	AE5	D	10	17	Right-handed 310
Helix 42	AE6	D	390	394	Right-handed 310
Helix 43	AE7	D	445	454	Right-handed alpha
Helix 44	AE8	D	470	476	Right-handed alpha
Helix 45	AE9	D	483	500	Right-handed alpha
Helix 46	AF1	D	514	525	Right-handed alpha
Helix 47	AF2	D	541	549	Right-handed alpha
Helix 48	AF3	D	551	561	Right-handed alpha
Helix 49	AF4	D	566	576	Right-handed alpha
Helix 50	AF5	D	577	585	Right-handed 310
Helix 51	AF6	D	602	615	Right-handed alpha
Helix 52	AF7	D	629	635	Right-handed alpha
Helix 53	AF8	D	637	655	Right-handed alpha

There are 31 sheets in PDB entry 6IGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	25	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	57	63	anti-parallel
Strand 4	A	69	70	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	85	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	104	109	anti-parallel
Strand 4	A	116	117	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	130	first strand
Strand 2	A	136	141	anti-parallel
Strand 3	A	177	182	anti-parallel
Strand 4	A	187	192	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	209	214	anti-parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	243	257	anti-parallel
Strand 5	A	264	269	anti-parallel
Strand 6	A	280	285	anti-parallel
Strand 7	A	288	291	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	324	331	anti-parallel
Strand 3	A	334	341	anti-parallel
Strand 4	A	344	350	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	362	first strand
Strand 2	A	367	373	anti-parallel
Strand 3	A	379	382	anti-parallel
Strand 4	A	385	386	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	408	first strand
Strand 2	A	411	418	anti-parallel
Strand 3	A	457	461	anti-parallel
Strand 4	A	426	432	parallel
Strand 5	A	503	513	parallel
Strand 6	A	532	536	parallel
Strand 7	A	589	594	parallel
Strand 8	A	619	624	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	25	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	57	63	anti-parallel
Strand 4	B	69	70	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	85	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	104	109	anti-parallel
Strand 4	B	116	117	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	130	first strand
Strand 2	B	136	141	anti-parallel
Strand 3	B	177	182	anti-parallel
Strand 4	B	187	192	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	226	232	anti-parallel
Strand 4	B	243	250	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	257	first strand
Strand 2	B	264	268	anti-parallel
Strand 3	B	280	285	anti-parallel
Strand 4	B	288	291	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	324	331	anti-parallel
Strand 3	B	334	341	anti-parallel
Strand 4	B	346	350	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	362	first strand
Strand 2	B	367	373	anti-parallel
Strand 3	B	376	382	anti-parallel
Strand 4	B	385	386	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	408	first strand
Strand 2	B	411	418	anti-parallel
Strand 3	B	457	461	anti-parallel
Strand 4	B	426	432	parallel
Strand 5	B	503	513	parallel
Strand 6	B	532	536	parallel
Strand 7	B	589	594	parallel
Strand 8	B	619	624	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	25	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	57	63	anti-parallel
Strand 4	C	69	70	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	85	first strand
Strand 2	C	91	97	anti-parallel
Strand 3	C	104	109	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	136	140	anti-parallel
Strand 3	C	178	182	anti-parallel
Strand 4	C	187	192	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	209	214	anti-parallel
Strand 3	C	226	232	anti-parallel
Strand 4	C	243	250	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	257	first strand
Strand 2	C	264	268	anti-parallel
Strand 3	C	280	285	anti-parallel
Strand 4	C	288	291	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	324	331	anti-parallel
Strand 3	C	334	341	anti-parallel
Strand 4	C	347	350	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	362	first strand
Strand 2	C	367	373	anti-parallel
Strand 3	C	379	382	anti-parallel
Strand 4	C	385	386	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	408	first strand
Strand 2	C	411	418	anti-parallel
Strand 3	C	457	461	anti-parallel
Strand 4	C	426	432	parallel
Strand 5	C	503	513	parallel
Strand 6	C	532	536	parallel
Strand 7	C	589	594	parallel
Strand 8	C	619	624	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	25	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	57	63	anti-parallel
Strand 4	D	69	70	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	85	first strand
Strand 2	D	91	97	anti-parallel
Strand 3	D	104	109	anti-parallel
Strand 4	D	116	117	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	136	140	anti-parallel
Strand 3	D	178	182	anti-parallel
Strand 4	D	187	192	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	203	first strand
Strand 2	D	209	214	anti-parallel
Strand 3	D	226	232	anti-parallel
Strand 4	D	243	250	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	257	first strand
Strand 2	D	264	268	anti-parallel
Strand 3	D	280	285	anti-parallel
Strand 4	D	288	291	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	319	first strand
Strand 2	D	324	331	anti-parallel
Strand 3	D	334	341	anti-parallel
Strand 4	D	346	350	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	362	first strand
Strand 2	D	367	373	anti-parallel
Strand 3	D	376	382	anti-parallel
Strand 4	D	385	386	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	408	first strand
Strand 2	D	411	418	anti-parallel
Strand 3	D	457	461	anti-parallel
Strand 4	D	426	432	parallel
Strand 5	D	503	513	parallel
Strand 6	D	532	536	parallel
Strand 7	D	589	594	parallel
Strand 8	D	619	624	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IGP