Analysis of interatomic Contacts of Structural Units in PDB entry:
6IGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IGY entry

There is 1 chain in PDB entry 6IGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13PHE 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6IGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 28Right-handed 310
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
38 42Right-handed 310
Helix 4
AA4
A
62 68Right-handed alpha
Helix 5
AA5
A
84 97Right-handed alpha
Helix 6
AA6
A
115 120Right-handed alpha
Helix 7
AA7
A
121 140Right-handed alpha
Helix 8
AA8
A
153 179Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
201 207Right-handed alpha
Helix 11
AB2
A
239 243Right-handed 310
Helix 12
AB3
A
246 257Right-handed alpha
Helix 13
AB4
A
260 262Right-handed 310
Helix 14
AB5
A
301 303Right-handed 310
Helix 15
AB6
A
334 349Right-handed alpha
Helix 16
AB7
A
357 361Right-handed 310
Helix 17
AB8
A
363 366Right-handed 310
Helix 18
AB9
A
367 376Right-handed alpha
Helix 19
AC1
A
378 382Right-handed 310
Helix 20
AC2
A
396 402Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6IGY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
44 52anti-parallel
Strand 3
A
101 107parallel
Strand 4
A
143 147parallel
Strand 5
A
185 191parallel
Strand 6
A
211 215parallel
Strand 7
A
264 269parallel
Strand 8
A
352 356parallel
Strand 9
A
17 23parallel
Strand 10
A
44 52parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
271 275anti-parallel
Strand 3
A
328 331anti-parallel
Strand 4
A
318 323anti-parallel
Strand 5
A
309 313anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il