Analysis of interatomic Contacts of Structural Units in PDB entry:
6IHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IHJ entry

There are 4 chains in PDB entry 6IHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 356ARG 542
C
 SER 358GLU 539
B
 MET 1VAL 133
D
 ASP 2VAL 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6IHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
369 371Right-handed 310
Helix 2
AA2
A
372 389Right-handed alpha
Helix 3
AA3
A
390 397Right-handed 310
Helix 4
AA4
A
421 425Right-handed 310
Helix 5
AA5
A
445 455Right-handed alpha
Helix 6
AA6
A
463 466Right-handed 310
Helix 7
AA7
A
533 542Right-handed alpha
Helix 8
AA8
C
369 371Right-handed 310
Helix 9
AA9
C
372 388Right-handed alpha
Helix 10
AB1
C
391 397Right-handed 310
Helix 11
AB2
C
418 423Right-handed alpha
Helix 12
AB3
C
445 455Right-handed alpha
Helix 13
AB4
C
490 495Right-handed alpha
Helix 14
AB5
C
533 539Right-handed alpha
Helix 15
AB6
B
2 30Right-handed alpha
Helix 16
AB7
B
31 36Right-handed 310
Helix 17
AB8
B
53 64Right-handed alpha
Helix 18
AB9
D
3 30Right-handed alpha
Helix 19
AC1
D
53 64Right-handed alpha
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There are 5 sheets in PDB entry 6IHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
467 473parallel
Strand 3
A
478 488anti-parallel
Strand 4
A
504 515anti-parallel
Strand 5
A
520 531anti-parallel
Strand 6
A
399 408parallel
Strand 7
A
443 444anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
467 473parallel
Strand 3
A
478 488anti-parallel
Strand 4
A
459 461anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
365 367first strand
Strand 2
C
458 473parallel
Strand 3
C
478 489anti-parallel
Strand 4
C
504 513anti-parallel
Strand 5
C
522 531anti-parallel
Strand 6
C
399 408parallel
Strand 7
C
443 444anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
38 46anti-parallel
Strand 3
B
121 131parallel
Strand 4
B
105 116anti-parallel
Strand 5
B
89 100anti-parallel
Strand 6
B
67 79anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 52first strand
Strand 2
D
38 46anti-parallel
Strand 3
D
122 131parallel
Strand 4
D
105 115anti-parallel
Strand 5
D
89 100anti-parallel
Strand 6
D
67 79anti-parallel
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