Analysis of interatomic Contacts of Structural Units in PDB entry:
6II0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6II0 entry

There are 4 chains in PDB entry 6II0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3221	THR 3563
B	ASP 3223	PRO 3564
C	SER 3268	THR 3563
D	SER 3268	THR 3563

There are 69 helices in PDB entry 6II0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3221	3230	Right-handed alpha
Helix 2	AA2	A	3248	3256	Right-handed alpha
Helix 3	AA3	A	3258	3263	Right-handed alpha
Helix 4	AA4	A	3271	3282	Right-handed alpha
Helix 5	AA5	A	3285	3307	Right-handed alpha
Helix 6	AA6	A	3309	3321	Right-handed alpha
Helix 7	AA7	A	3350	3367	Right-handed alpha
Helix 8	AA8	A	3371	3389	Right-handed alpha
Helix 9	AA9	A	3390	3393	Right-handed 310
Helix 10	AB1	A	3394	3414	Right-handed alpha
Helix 11	AB2	A	3415	3419	Right-handed 310
Helix 12	AB3	A	3430	3434	Right-handed 310
Helix 13	AB4	A	3436	3446	Right-handed alpha
Helix 14	AB5	A	3447	3450	Right-handed 310
Helix 15	AB6	A	3472	3476	Right-handed 310
Helix 16	AB7	A	3492	3505	Right-handed alpha
Helix 17	AB8	A	3510	3515	Right-handed alpha
Helix 18	AB9	A	3534	3541	Right-handed alpha
Helix 19	AC1	A	3550	3556	Right-handed alpha
Helix 20	AC2	B	3224	3230	Right-handed alpha
Helix 21	AC3	B	3246	3255	Right-handed alpha
Helix 22	AC4	B	3258	3263	Right-handed alpha
Helix 23	AC5	B	3271	3282	Right-handed alpha
Helix 24	AC6	B	3285	3307	Right-handed alpha
Helix 25	AC7	B	3309	3322	Right-handed alpha
Helix 26	AC8	B	3350	3367	Right-handed alpha
Helix 27	AC9	B	3371	3389	Right-handed alpha
Helix 28	AD1	B	3390	3393	Right-handed 310
Helix 29	AD2	B	3394	3414	Right-handed alpha
Helix 30	AD3	B	3415	3419	Right-handed 310
Helix 31	AD4	B	3430	3434	Right-handed 310
Helix 32	AD5	B	3436	3446	Right-handed alpha
Helix 33	AD6	B	3447	3450	Right-handed 310
Helix 34	AD7	B	3472	3476	Right-handed 310
Helix 35	AD8	B	3492	3505	Right-handed alpha
Helix 36	AD9	B	3510	3515	Right-handed alpha
Helix 37	AE1	B	3534	3540	Right-handed alpha
Helix 38	AE2	B	3550	3556	Right-handed alpha
Helix 39	AE3	C	3271	3280	Right-handed alpha
Helix 40	AE4	C	3285	3307	Right-handed alpha
Helix 41	AE5	C	3309	3322	Right-handed alpha
Helix 42	AE6	C	3350	3367	Right-handed alpha
Helix 43	AE7	C	3371	3389	Right-handed alpha
Helix 44	AE8	C	3390	3393	Right-handed 310
Helix 45	AE9	C	3394	3414	Right-handed alpha
Helix 46	AF1	C	3415	3419	Right-handed 310
Helix 47	AF2	C	3432	3434	Right-handed 310
Helix 48	AF3	C	3436	3446	Right-handed alpha
Helix 49	AF4	C	3447	3450	Right-handed 310
Helix 50	AF5	C	3492	3505	Right-handed alpha
Helix 51	AF6	C	3510	3515	Right-handed alpha
Helix 52	AF7	C	3534	3540	Right-handed alpha
Helix 53	AF8	C	3550	3557	Right-handed alpha
Helix 54	AF9	D	3271	3280	Right-handed alpha
Helix 55	AG1	D	3285	3307	Right-handed alpha
Helix 56	AG2	D	3309	3322	Right-handed alpha
Helix 57	AG3	D	3350	3367	Right-handed alpha
Helix 58	AG4	D	3371	3389	Right-handed alpha
Helix 59	AG5	D	3390	3393	Right-handed 310
Helix 60	AG6	D	3394	3414	Right-handed alpha
Helix 61	AG7	D	3415	3419	Right-handed 310
Helix 62	AG8	D	3430	3434	Right-handed 310
Helix 63	AG9	D	3436	3446	Right-handed alpha
Helix 64	AH1	D	3447	3450	Right-handed 310
Helix 65	AH2	D	3472	3476	Right-handed 310
Helix 66	AH3	D	3492	3505	Right-handed alpha
Helix 67	AH4	D	3510	3515	Right-handed alpha
Helix 68	AH5	D	3534	3541	Right-handed alpha
Helix 69	AH6	D	3550	3557	Right-handed alpha

There are 7 sheets in PDB entry 6II0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3330	3333	first strand
Strand 2	C	3486	3490	anti-parallel
Strand 3	C	3477	3482	anti-parallel
Strand 4	C	3464	3470	anti-parallel
Strand 5	C	3454	3459	anti-parallel
Strand 6	C	3529	3533	anti-parallel
Strand 7	C	3425	3430	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3337	3341	first strand
Strand 2	C	3337	3341	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3425	3429	first strand
Strand 2	A	3529	3533	anti-parallel
Strand 3	A	3454	3460	anti-parallel
Strand 4	A	3463	3470	anti-parallel
Strand 5	A	3477	3482	anti-parallel
Strand 6	A	3486	3490	anti-parallel
Strand 7	C	3330	3333	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3330	3333	first strand
Strand 2	D	3486	3490	anti-parallel
Strand 3	D	3477	3482	anti-parallel
Strand 4	D	3464	3470	anti-parallel
Strand 5	D	3454	3459	anti-parallel
Strand 6	D	3529	3533	anti-parallel
Strand 7	D	3425	3429	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3337	3341	first strand
Strand 2	D	3337	3341	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3425	3429	first strand
Strand 2	B	3529	3533	anti-parallel
Strand 3	B	3454	3460	anti-parallel
Strand 4	B	3463	3470	anti-parallel
Strand 5	B	3477	3482	anti-parallel
Strand 6	B	3486	3490	anti-parallel
Strand 7	D	3330	3333	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3518	3519	first strand
Strand 2	B	3525	3526	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6II0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6II0