Analysis of interatomic Contacts of Structural Units in PDB entry:
6II2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6II2 entry

There are 4 chains in PDB entry 6II2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2909	ALA 3562
B	GLU 2909	ALA 3562
C	ASN 2910	ALA 3562
D	GLU 2909	PHE 3560

There are103 helices in PDB entry 6II2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2927	2939	Right-handed alpha
Helix 2	AA2	A	2940	2946	Right-handed alpha
Helix 3	AA3	A	2948	2956	Right-handed alpha
Helix 4	AA4	A	3008	3022	Right-handed alpha
Helix 5	AA5	A	3043	3060	Right-handed alpha
Helix 6	AA6	A	3076	3091	Right-handed alpha
Helix 7	AA7	A	3106	3115	Right-handed alpha
Helix 8	AA8	A	3121	3130	Right-handed alpha
Helix 9	AA9	A	3135	3141	Right-handed alpha
Helix 10	AB1	A	3156	3173	Right-handed alpha
Helix 11	AB2	A	3187	3201	Right-handed alpha
Helix 12	AB3	A	3207	3225	Right-handed alpha
Helix 13	AB4	A	3247	3254	Right-handed alpha
Helix 14	AB5	A	3258	3263	Right-handed alpha
Helix 15	AB6	A	3271	3280	Right-handed alpha
Helix 16	AB7	A	3285	3304	Right-handed alpha
Helix 17	AB8	A	3309	3322	Right-handed alpha
Helix 18	AB9	A	3353	3367	Right-handed alpha
Helix 19	AC1	A	3371	3389	Right-handed alpha
Helix 20	AC2	A	3394	3414	Right-handed alpha
Helix 21	AC3	A	3432	3434	Right-handed 310
Helix 22	AC4	A	3436	3446	Right-handed alpha
Helix 23	AC5	A	3492	3505	Right-handed alpha
Helix 24	AC6	A	3510	3515	Right-handed alpha
Helix 25	AC7	A	3534	3541	Right-handed alpha
Helix 26	AC8	A	3550	3556	Right-handed alpha
Helix 27	AC9	B	2927	2939	Right-handed alpha
Helix 28	AD1	B	2940	2946	Right-handed alpha
Helix 29	AD2	B	2948	2956	Right-handed alpha
Helix 30	AD3	B	3008	3022	Right-handed alpha
Helix 31	AD4	B	3043	3060	Right-handed alpha
Helix 32	AD5	B	3076	3091	Right-handed alpha
Helix 33	AD6	B	3106	3115	Right-handed alpha
Helix 34	AD7	B	3122	3130	Right-handed alpha
Helix 35	AD8	B	3135	3141	Right-handed alpha
Helix 36	AD9	B	3156	3173	Right-handed alpha
Helix 37	AE1	B	3187	3200	Right-handed alpha
Helix 38	AE2	B	3207	3225	Right-handed alpha
Helix 39	AE3	B	3247	3254	Right-handed alpha
Helix 40	AE4	B	3258	3263	Right-handed alpha
Helix 41	AE5	B	3271	3282	Right-handed alpha
Helix 42	AE6	B	3285	3303	Right-handed alpha
Helix 43	AE7	B	3309	3322	Right-handed alpha
Helix 44	AE8	B	3352	3367	Right-handed alpha
Helix 45	AE9	B	3371	3388	Right-handed alpha
Helix 46	AF1	B	3394	3414	Right-handed alpha
Helix 47	AF2	B	3436	3446	Right-handed alpha
Helix 48	AF3	B	3483	3485	Right-handed 310
Helix 49	AF4	B	3492	3505	Right-handed alpha
Helix 50	AF5	B	3510	3515	Right-handed alpha
Helix 51	AF6	B	3534	3541	Right-handed alpha
Helix 52	AF7	B	3550	3556	Right-handed alpha
Helix 53	AF8	C	2927	2939	Right-handed alpha
Helix 54	AF9	C	2940	2946	Right-handed alpha
Helix 55	AG1	C	2948	2956	Right-handed alpha
Helix 56	AG2	C	3008	3022	Right-handed alpha
Helix 57	AG3	C	3043	3060	Right-handed alpha
Helix 58	AG4	C	3076	3091	Right-handed alpha
Helix 59	AG5	C	3106	3115	Right-handed alpha
Helix 60	AG6	C	3121	3130	Right-handed alpha
Helix 61	AG7	C	3135	3141	Right-handed alpha
Helix 62	AG8	C	3156	3173	Right-handed alpha
Helix 63	AG9	C	3187	3201	Right-handed alpha
Helix 64	AH1	C	3207	3222	Right-handed alpha
Helix 65	AH2	C	3249	3254	Right-handed alpha
Helix 66	AH3	C	3258	3263	Right-handed alpha
Helix 67	AH4	C	3272	3279	Right-handed alpha
Helix 68	AH5	C	3287	3300	Right-handed alpha
Helix 69	AH6	C	3301	3305	Right-handed 310
Helix 70	AH7	C	3309	3320	Right-handed alpha
Helix 71	AH8	C	3352	3367	Right-handed alpha
Helix 72	AH9	C	3371	3388	Right-handed alpha
Helix 73	AI1	C	3396	3414	Right-handed alpha
Helix 74	AI2	C	3430	3434	Right-handed 310
Helix 75	AI3	C	3436	3446	Right-handed alpha
Helix 76	AI4	C	3492	3505	Right-handed alpha
Helix 77	AI5	C	3510	3516	Right-handed alpha
Helix 78	AI6	C	3534	3541	Right-handed alpha
Helix 79	AI7	C	3550	3556	Right-handed alpha
Helix 80	AI8	D	2927	2939	Right-handed alpha
Helix 81	AI9	D	2940	2946	Right-handed alpha
Helix 82	AJ1	D	2948	2956	Right-handed alpha
Helix 83	AJ2	D	3008	3022	Right-handed alpha
Helix 84	AJ3	D	3043	3060	Right-handed alpha
Helix 85	AJ4	D	3079	3091	Right-handed alpha
Helix 86	AJ5	D	3106	3114	Right-handed alpha
Helix 87	AJ6	D	3121	3130	Right-handed alpha
Helix 88	AJ7	D	3135	3141	Right-handed alpha
Helix 89	AJ8	D	3156	3173	Right-handed alpha
Helix 90	AJ9	D	3187	3201	Right-handed alpha
Helix 91	AK1	D	3207	3226	Right-handed alpha
Helix 92	AK2	D	3247	3254	Right-handed alpha
Helix 93	AK3	D	3258	3263	Right-handed alpha
Helix 94	AK4	D	3271	3281	Right-handed alpha
Helix 95	AK5	D	3285	3303	Right-handed alpha
Helix 96	AK6	D	3309	3322	Right-handed alpha
Helix 97	AK7	D	3352	3366	Right-handed alpha
Helix 98	AK8	D	3372	3388	Right-handed alpha
Helix 99	AK9	D	3397	3414	Right-handed alpha
Helix 100	AL1	D	3438	3443	Right-handed alpha
Helix 101	AL2	D	3492	3500	Right-handed alpha
Helix 102	AL3	D	3534	3541	Right-handed alpha
Helix 103	AL4	D	3552	3556	Right-handed alpha

There are 10 sheets in PDB entry 6II2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2966	2970	first strand
Strand 2	A	2975	2981	anti-parallel
Strand 3	A	3026	3030	anti-parallel
Strand 4	A	2998	3001	parallel
Strand 5	A	3069	3070	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3098	3101	first strand
Strand 2	A	3148	3152	parallel
Strand 3	A	3175	3177	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3330	3332	first strand
Strand 2	A	3487	3490	anti-parallel
Strand 3	A	3477	3481	anti-parallel
Strand 4	A	3464	3470	anti-parallel
Strand 5	A	3454	3459	anti-parallel
Strand 6	A	3529	3533	anti-parallel
Strand 7	A	3425	3430	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2966	2970	first strand
Strand 2	B	2975	2981	anti-parallel
Strand 3	B	3026	3030	anti-parallel
Strand 4	B	2998	3002	parallel
Strand 5	B	3069	3074	parallel
Strand 6	B	3097	3101	parallel
Strand 7	B	3148	3152	parallel
Strand 8	B	3175	3177	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3330	3332	first strand
Strand 2	B	3486	3490	anti-parallel
Strand 3	B	3477	3482	anti-parallel
Strand 4	B	3464	3470	anti-parallel
Strand 5	B	3454	3459	anti-parallel
Strand 6	B	3529	3533	anti-parallel
Strand 7	B	3425	3429	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2966	2970	first strand
Strand 2	C	2975	2981	anti-parallel
Strand 3	C	3026	3030	anti-parallel
Strand 4	C	2998	3002	parallel
Strand 5	C	3069	3074	parallel
Strand 6	C	3097	3101	parallel
Strand 7	C	3148	3152	parallel
Strand 8	C	3175	3177	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3330	3332	first strand
Strand 2	C	3487	3490	anti-parallel
Strand 3	C	3477	3481	anti-parallel
Strand 4	C	3464	3470	anti-parallel
Strand 5	C	3454	3459	anti-parallel
Strand 6	C	3529	3533	anti-parallel
Strand 7	C	3425	3428	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2966	2970	first strand
Strand 2	D	2975	2981	anti-parallel
Strand 3	D	3026	3030	anti-parallel
Strand 4	D	2998	3002	parallel
Strand 5	D	3069	3073	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3098	3101	first strand
Strand 2	D	3148	3152	parallel
Strand 3	D	3175	3177	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3331	3332	first strand
Strand 2	D	3487	3490	anti-parallel
Strand 3	D	3478	3481	anti-parallel
Strand 4	D	3466	3469	anti-parallel
Strand 5	D	3454	3457	anti-parallel
Strand 6	D	3531	3532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6II2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6II2