Analysis of interatomic Contacts of Structural Units in PDB entry:
6II4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6II4 entry

There are 6 chains in PDB entry 6II4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ILE 317
B	ALA 5	ARG 170
C	ASP 1	ILE 317
D	ALA 5	ARG 170
E	GLU 1	SER 225
F	ASN 1	THR 108

There are 25 helices in PDB entry 6II4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	62	Right-handed alpha
Helix 2	AA2	A	63	70	Right-handed 310
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	178	187	Right-handed alpha
Helix 5	AA5	B	37	50	Right-handed alpha
Helix 6	AA6	B	50	56	Right-handed alpha
Helix 7	AA7	B	74	126	Right-handed alpha
Helix 8	AA8	B	145	154	Right-handed alpha
Helix 9	AA9	B	158	170	Right-handed alpha
Helix 10	AB1	C	57	62	Right-handed alpha
Helix 11	AB2	C	63	70	Right-handed 310
Helix 12	AB3	C	94	103	Right-handed alpha
Helix 13	AB4	C	178	187	Right-handed alpha
Helix 14	AB5	D	37	50	Right-handed alpha
Helix 15	AB6	D	50	56	Right-handed alpha
Helix 16	AB7	D	74	126	Right-handed alpha
Helix 17	AB8	D	145	154	Right-handed alpha
Helix 18	AB9	D	162	170	Right-handed alpha
Helix 19	AC1	E	87	91	Right-handed 310
Helix 20	AC2	F	82	86	Right-handed 310
Helix 21	AC3	F	125	130	Right-handed alpha
Helix 22	AC4	F	185	190	Right-handed alpha
Helix 23	AC5	L	82	86	Right-handed 310
Helix 24	AC6	L	125	130	Right-handed alpha
Helix 25	AC7	L	185	191	Right-handed alpha

There are 41 sheets in PDB entry 6II4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	B	23	25	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	285	286	parallel
Strand 3	A	298	299	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	264	265	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	76	79	parallel
Strand 3	A	256	259	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	247	251	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	134	135	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	142	first strand
Strand 2	A	242	245	anti-parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	220	228	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	193	197	anti-parallel
Strand 4	A	200	204	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	272	274	anti-parallel
Strand 3	A	293	294	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	138	140	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	23	28	anti-parallel
Strand 3	C	2	6	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	285	286	parallel
Strand 3	C	298	299	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	263	265	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	76	79	parallel
Strand 3	C	256	259	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	140	142	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	220	228	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	134	135	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	160	first strand
Strand 2	C	233	238	anti-parallel
Strand 3	C	193	197	anti-parallel
Strand 4	C	200	204	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	279	first strand
Strand 2	C	272	274	anti-parallel
Strand 3	C	293	294	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	117	121	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	134	first strand
Strand 2	E	145	155	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	173	175	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	134	first strand
Strand 2	E	145	155	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	179	180	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	207	first strand
Strand 2	E	218	221	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	63	68	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	105	109	parallel
Strand 3	F	88	94	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	46	49	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	105	109	parallel
Strand 3	F	88	94	anti-parallel
Strand 4	F	99	101	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	120	first strand
Strand 2	F	139	143	anti-parallel
Strand 3	F	176	178	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	180	184	anti-parallel
Strand 3	F	162	164	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	159	first strand
Strand 2	F	149	153	anti-parallel
Strand 3	F	195	201	anti-parallel
Strand 4	F	204	210	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	186	195	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	204	209	anti-parallel
Strand 3	H	218	221	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	73	78	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	137	143	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	134	135	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	137	143	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	162	164	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	149	153	first strand
Strand 2	L	195	201	anti-parallel
Strand 3	L	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6II4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6II4