Analysis of interatomic Contacts of Structural Units in PDB entry:
6II6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6II6 entry

There are 4 chains in PDB entry 6II6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 3218LYS 3566
B
 GLY 3219MSE 3565
C
 LYS 15GLU 178
D
 GLY 14LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6II6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3218 3232Right-handed alpha
Helix 2
AA2
A
3233 3237Right-handed 310
Helix 3
AA3
A
3243 3246Right-handed 310
Helix 4
AA4
A
3247 3254Right-handed alpha
Helix 5
AA5
A
3258 3263Right-handed alpha
Helix 6
AA6
A
3271 3282Right-handed alpha
Helix 7
AA7
A
3285 3322Right-handed alpha
Helix 8
AA8
A
3335 3343Right-handed alpha
Helix 9
AA9
A
3350 3367Right-handed alpha
Helix 10
AB1
A
3371 3389Right-handed alpha
Helix 11
AB2
A
3390 3393Right-handed 310
Helix 12
AB3
A
3394 3414Right-handed alpha
Helix 13
AB4
A
3415 3419Right-handed 310
Helix 14
AB5
A
3432 3434Right-handed 310
Helix 15
AB6
A
3436 3446Right-handed alpha
Helix 16
AB7
A
3447 3450Right-handed 310
Helix 17
AB8
A
3472 3476Right-handed 310
Helix 18
AB9
A
3492 3505Right-handed alpha
Helix 19
AC1
A
3510 3515Right-handed alpha
Helix 20
AC2
A
3534 3541Right-handed alpha
Helix 21
AC3
A
3550 3556Right-handed alpha
Helix 22
AC4
B
3220 3232Right-handed alpha
Helix 23
AC5
B
3243 3246Right-handed 310
Helix 24
AC6
B
3247 3254Right-handed alpha
Helix 25
AC7
B
3258 3263Right-handed alpha
Helix 26
AC8
B
3271 3282Right-handed alpha
Helix 27
AC9
B
3285 3322Right-handed alpha
Helix 28
AD1
B
3335 3343Right-handed alpha
Helix 29
AD2
B
3350 3367Right-handed alpha
Helix 30
AD3
B
3371 3389Right-handed alpha
Helix 31
AD4
B
3390 3393Right-handed 310
Helix 32
AD5
B
3394 3414Right-handed alpha
Helix 33
AD6
B
3415 3419Right-handed 310
Helix 34
AD7
B
3430 3434Right-handed 310
Helix 35
AD8
B
3436 3446Right-handed alpha
Helix 36
AD9
B
3472 3476Right-handed 310
Helix 37
AE1
B
3492 3505Right-handed alpha
Helix 38
AE2
B
3510 3515Right-handed alpha
Helix 39
AE3
B
3534 3541Right-handed alpha
Helix 40
AE4
B
3550 3556Right-handed alpha
Helix 41
AE5
C
29 40Right-handed alpha
Helix 42
AE6
C
71 82Right-handed 310
Helix 43
AE7
C
99 112Right-handed alpha
Helix 44
AE8
C
113 117Right-handed 310
Helix 45
AE9
C
135 143Right-handed alpha
Helix 46
AF1
C
144 148Right-handed 310
Helix 47
AF2
C
165 178Right-handed alpha
Helix 48
AF3
D
29 40Right-handed alpha
Helix 49
AF4
D
71 82Right-handed 310
Helix 50
AF5
D
99 113Right-handed alpha
Helix 51
AF6
D
135 143Right-handed alpha
Helix 52
AF7
D
165 177Right-handed alpha
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There are 6 sheets in PDB entry 6II6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3330 3333first strand
Strand 2
A
3486 3490anti-parallel
Strand 3
A
3477 3482anti-parallel
Strand 4
A
3463 3470anti-parallel
Strand 5
A
3454 3460anti-parallel
Strand 6
A
3529 3533anti-parallel
Strand 7
A
3425 3430anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3518 3519first strand
Strand 2
A
3525 3526anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3330 3333first strand
Strand 2
B
3486 3490anti-parallel
Strand 3
B
3477 3482anti-parallel
Strand 4
B
3463 3470anti-parallel
Strand 5
B
3454 3460anti-parallel
Strand 6
B
3529 3533anti-parallel
Strand 7
B
3425 3429anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3518 3519first strand
Strand 2
B
3525 3526anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 58first strand
Strand 2
C
61 68anti-parallel
Strand 3
C
16 23parallel
Strand 4
C
87 93parallel
Strand 5
C
120 126parallel
Strand 6
C
153 157parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 58first strand
Strand 2
D
61 68anti-parallel
Strand 3
D
16 23parallel
Strand 4
D
87 93parallel
Strand 5
D
120 126parallel
Strand 6
D
153 157parallel
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