Analysis of interatomic Contacts of Structural Units in PDB entry:
6II8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6II8 entry

There are 12 chains in PDB entry 6II8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLU 316
B	GLY 322	GLN 493
C	ASP 1	GLU 316
D	GLY 322	GLN 493
E	ASP 1	GLU 316
F	GLY 322	ILE 492
J	GLU 20	VAL 140
K	ASN 20	LEU 126
G	GLU 20	VAL 242
H	GLU 20	VAL 242
I	ASN 20	THR 232
L	ASN 20	THR 232

There are 39 helices in PDB entry 6II8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	62	Right-handed alpha
Helix 2	AA2	A	63	67	Right-handed 310
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	178	187	Right-handed alpha
Helix 5	AA5	B	358	377	Right-handed alpha
Helix 6	AA6	B	395	444	Right-handed alpha
Helix 7	AA7	B	445	448	Right-handed 310
Helix 8	AA8	B	466	475	Right-handed alpha
Helix 9	AA9	B	480	493	Right-handed alpha
Helix 10	AB1	C	57	62	Right-handed alpha
Helix 11	AB2	C	63	67	Right-handed 310
Helix 12	AB3	C	94	104	Right-handed alpha
Helix 13	AB4	C	178	187	Right-handed alpha
Helix 14	AB5	D	358	377	Right-handed alpha
Helix 15	AB6	D	395	447	Right-handed alpha
Helix 16	AB7	D	466	475	Right-handed alpha
Helix 17	AB8	D	479	493	Right-handed alpha
Helix 18	AB9	E	57	62	Right-handed alpha
Helix 19	AC1	E	63	70	Right-handed 310
Helix 20	AC2	E	94	104	Right-handed alpha
Helix 21	AC3	E	178	186	Right-handed alpha
Helix 22	AC4	F	358	377	Right-handed alpha
Helix 23	AC5	F	395	447	Right-handed alpha
Helix 24	AC6	F	466	475	Right-handed alpha
Helix 25	AC7	F	479	482	Right-handed 310
Helix 26	AC8	F	483	492	Right-handed alpha
Helix 27	AC9	J	47	51	Right-handed 310
Helix 28	AD1	K	47	51	Right-handed 310
Helix 29	AD2	K	101	105	Right-handed 310
Helix 30	AD3	G	47	51	Right-handed 310
Helix 31	AD4	H	47	51	Right-handed 310
Helix 32	AD5	H	106	110	Right-handed 310
Helix 33	AD6	H	218	220	Right-handed 310
Helix 34	AD7	I	47	51	Right-handed 310
Helix 35	AD8	I	101	105	Right-handed 310
Helix 36	AD9	I	204	209	Right-handed alpha
Helix 37	AE1	L	101	105	Right-handed 310
Helix 38	AE2	L	144	150	Right-handed alpha
Helix 39	AE3	L	204	211	Right-handed alpha

There are 64 sheets in PDB entry 6II8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	357	first strand
Strand 2	B	343	348	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	458	461	anti-parallel
Strand 5	B	451	452	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	22	26	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	306	308	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	285	286	parallel
Strand 3	A	298	299	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	263	265	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	76	79	parallel
Strand 3	A	256	259	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	220	228	parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	140	142	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	247	251	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	130	first strand
Strand 2	A	134	135	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	193	196	anti-parallel
Strand 4	A	201	204	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	272	274	anti-parallel
Strand 3	A	293	295	anti-parallel
Strand 4	B	383	384	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	357	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	458	461	anti-parallel
Strand 5	D	451	453	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	22	26	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	307	308	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	285	286	parallel
Strand 3	C	298	299	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	263	265	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	76	79	parallel
Strand 3	C	256	259	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	140	142	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	167	175	anti-parallel
Strand 4	C	220	228	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	134	135	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	160	first strand
Strand 2	C	233	238	anti-parallel
Strand 3	C	193	196	anti-parallel
Strand 4	C	201	204	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	278	first strand
Strand 2	C	272	274	anti-parallel
Strand 3	C	293	295	anti-parallel
Strand 4	D	383	384	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	357	first strand
Strand 2	F	343	349	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	458	461	anti-parallel
Strand 5	F	451	453	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	17	first strand
Strand 2	E	22	26	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	306	308	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	285	286	parallel
Strand 3	E	298	299	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	264	265	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	76	79	parallel
Strand 3	E	256	259	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	220	228	parallel
Strand 3	E	167	175	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	140	142	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	112	first strand
Strand 2	E	247	251	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	134	135	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	233	238	anti-parallel
Strand 3	E	193	196	anti-parallel
Strand 4	E	201	204	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	278	first strand
Strand 2	E	272	274	anti-parallel
Strand 3	E	293	294	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	22	26	first strand
Strand 2	J	38	44	anti-parallel
Strand 3	J	97	101	anti-parallel
Strand 4	J	88	92	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	79	first strand
Strand 2	J	65	70	anti-parallel
Strand 3	J	53	58	anti-parallel
Strand 4	J	112	118	anti-parallel
Strand 5	J	131	134	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	79	first strand
Strand 2	J	65	70	anti-parallel
Strand 3	J	53	58	anti-parallel
Strand 4	J	112	118	anti-parallel
Strand 5	J	138	139	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	23	24	first strand
Strand 2	K	42	43	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	68	first strand
Strand 2	K	54	58	anti-parallel
Strand 3	K	107	113	anti-parallel
Strand 4	K	118	120	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	82	87	first strand
Strand 2	K	92	97	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	26	first strand
Strand 2	G	37	44	anti-parallel
Strand 3	G	97	102	anti-parallel
Strand 4	G	87	92	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	139	142	parallel
Strand 3	G	111	118	anti-parallel
Strand 4	G	53	58	anti-parallel
Strand 5	G	64	70	anti-parallel
Strand 6	G	77	79	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	139	142	parallel
Strand 3	G	111	118	anti-parallel
Strand 4	G	131	134	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	155	first strand
Strand 2	G	168	176	anti-parallel
Strand 3	G	207	214	anti-parallel
Strand 4	G	194	196	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	182	185	first strand
Strand 2	G	226	231	anti-parallel
Strand 3	G	236	241	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	26	first strand
Strand 2	H	37	44	anti-parallel
Strand 3	H	97	102	anti-parallel
Strand 4	H	87	88	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	26	first strand
Strand 2	H	37	44	anti-parallel
Strand 3	H	97	102	anti-parallel
Strand 4	H	91	92	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	139	142	parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	53	58	anti-parallel
Strand 5	H	64	70	anti-parallel
Strand 6	H	77	79	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	139	142	parallel
Strand 3	H	111	118	anti-parallel
Strand 4	H	131	134	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	155	first strand
Strand 2	H	166	176	anti-parallel
Strand 3	H	207	216	anti-parallel
Strand 4	H	194	196	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	155	first strand
Strand 2	H	166	176	anti-parallel
Strand 3	H	207	216	anti-parallel
Strand 4	H	200	201	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	182	185	first strand
Strand 2	H	226	231	anti-parallel
Strand 3	H	236	241	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	24	first strand
Strand 2	I	37	43	anti-parallel
Strand 3	I	92	97	anti-parallel
Strand 4	I	82	83	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	23	24	first strand
Strand 2	I	37	43	anti-parallel
Strand 3	I	92	97	anti-parallel
Strand 4	I	86	87	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	31	first strand
Strand 2	I	124	128	parallel
Strand 3	I	107	113	anti-parallel
Strand 4	I	54	58	anti-parallel
Strand 5	I	65	68	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	31	first strand
Strand 2	I	124	128	parallel
Strand 3	I	107	113	anti-parallel
Strand 4	I	118	120	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	137	141	first strand
Strand 2	I	153	162	anti-parallel
Strand 3	I	195	203	anti-parallel
Strand 4	I	182	184	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	137	141	first strand
Strand 2	I	153	162	anti-parallel
Strand 3	I	195	203	anti-parallel
Strand 4	I	188	189	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	168	173	first strand
Strand 2	I	214	220	anti-parallel
Strand 3	I	223	229	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	24	first strand
Strand 2	L	37	43	anti-parallel
Strand 3	L	92	97	anti-parallel
Strand 4	L	83	87	anti-parallel

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There are 5 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	124	128	parallel
Strand 3	L	106	113	anti-parallel
Strand 4	L	54	58	anti-parallel
Strand 5	L	65	68	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	124	128	parallel
Strand 3	L	106	113	anti-parallel
Strand 4	L	118	120	anti-parallel

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There are 4 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	139	141	first strand
Strand 2	L	153	162	anti-parallel
Strand 3	L	195	203	anti-parallel
Strand 4	L	182	184	anti-parallel

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There are 4 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	139	141	first strand
Strand 2	L	153	162	anti-parallel
Strand 3	L	195	203	anti-parallel
Strand 4	L	188	189	anti-parallel

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There are 4 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	176	177	first strand
Strand 2	L	168	173	anti-parallel
Strand 3	L	214	220	anti-parallel
Strand 4	L	223	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6II8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6II8