Analysis of interatomic Contacts of Structural Units in PDB entry:
6IIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IIH entry

There are 2 chains in PDB entry 6IIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 478
B
 MET 1ARG 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6IIH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
38 51Right-handed alpha
Helix 3
AA3
A
59 80Right-handed alpha
Helix 4
AA4
A
83 91Right-handed alpha
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
107 113Right-handed alpha
Helix 7
AA7
A
114 123Right-handed alpha
Helix 8
AA8
A
125 134Right-handed alpha
Helix 9
AA9
A
136 142Right-handed alpha
Helix 10
AB1
A
142 156Right-handed alpha
Helix 11
AB2
A
158 162Right-handed 310
Helix 12
AB3
A
165 173Right-handed alpha
Helix 13
AB4
A
184 194Right-handed alpha
Helix 14
AB5
A
207 215Right-handed alpha
Helix 15
AB6
A
217 221Right-handed 310
Helix 16
AB7
A
226 232Right-handed alpha
Helix 17
AB8
A
238 250Right-handed alpha
Helix 18
AB9
A
252 254Right-handed 310
Helix 19
AC1
A
255 264Right-handed alpha
Helix 20
AC2
A
272 278Right-handed alpha
Helix 21
AC3
A
311 319Right-handed alpha
Helix 22
AC4
A
328 352Right-handed alpha
Helix 23
AC5
A
358 368Right-handed alpha
Helix 24
AC6
A
371 386Right-handed alpha
Helix 25
AC7
A
393 404Right-handed alpha
Helix 26
AC8
A
406 420Right-handed alpha
Helix 27
AC9
A
425 438Right-handed alpha
Helix 28
AD1
A
442 454Right-handed alpha
Helix 29
AD2
A
462 475Right-handed alpha
Helix 30
AD3
B
2 11Right-handed alpha
Helix 31
AD4
B
38 49Right-handed alpha
Helix 32
AD5
B
59 80Right-handed alpha
Helix 33
AD6
B
83 91Right-handed alpha
Helix 34
AD7
B
92 107Right-handed alpha
Helix 35
AD8
B
109 113Right-handed 310
Helix 36
AD9
B
114 123Right-handed alpha
Helix 37
AE1
B
125 134Right-handed alpha
Helix 38
AE2
B
136 142Right-handed alpha
Helix 39
AE3
B
142 156Right-handed alpha
Helix 40
AE4
B
162 173Right-handed alpha
Helix 41
AE5
B
184 194Right-handed alpha
Helix 42
AE6
B
207 221Right-handed alpha
Helix 43
AE7
B
226 232Right-handed alpha
Helix 44
AE8
B
238 250Right-handed alpha
Helix 45
AE9
B
252 264Right-handed alpha
Helix 46
AF1
B
311 319Right-handed alpha
Helix 47
AF2
B
328 352Right-handed alpha
Helix 48
AF3
B
358 371Right-handed alpha
Helix 49
AF4
B
375 386Right-handed alpha
Helix 50
AF5
B
393 406Right-handed alpha
Helix 51
AF6
B
406 414Right-handed alpha
Helix 52
AF7
B
414 420Right-handed alpha
Helix 53
AF8
B
426 438Right-handed alpha
Helix 54
AF9
B
442 454Right-handed alpha
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There are 7 sheets in PDB entry 6IIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
25 29anti-parallel
Strand 3
A
31 33anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
175 177anti-parallel
Strand 3
A
204 205parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
326 327anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 19first strand
Strand 2
B
25 28anti-parallel
Strand 3
B
31 32anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
180 182anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
326 327anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 425first strand
Strand 2
B
460 461anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il