Analysis of interatomic Contacts of Structural Units in PDB entry:
6IIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IIO entry

There are 3 chains in PDB entry 6IIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 73ASN 296
B
 ALA 97GLN 320
C
 GLY 1GLN 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6IIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 78Right-handed 310
Helix 2
AA2
A
79 84Right-handed alpha
Helix 3
AA3
A
114 122Right-handed alpha
Helix 4
AA4
A
166 171Right-handed 310
Helix 5
AA5
A
223 227Right-handed 310
Helix 6
AA6
B
104 106Right-handed 310
Helix 7
AA7
B
151 155Right-handed alpha
Helix 8
AA8
B
159 167Right-handed alpha
Helix 9
AA9
B
217 222Right-handed alpha
Helix 10
AB1
B
232 236Right-handed 310
Helix 11
AB2
B
241 248Right-handed 310
Helix 12
AB3
C
43 48Right-handed alpha
Helix 13
AB4
C
63 68Right-handed 310
Helix 14
AB5
C
92 96Right-handed 310
Helix 15
AB6
C
97 103Right-handed alpha
Helix 16
AB7
C
143 149Right-handed alpha
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There are 10 sheets in PDB entry 6IIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 96first strand
Strand 2
A
244 259anti-parallel
Strand 3
A
126 139anti-parallel
Strand 4
A
199 200anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
126 139anti-parallel
Strand 3
A
244 259anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
230 235anti-parallel
Strand 3
A
148 154anti-parallel
Strand 4
A
176 180anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
260 265parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
302 309anti-parallel
Strand 5
B
133 134anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
260 265parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
302 309anti-parallel
Strand 5
B
138 140anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
147 150anti-parallel
Strand 3
B
282 293anti-parallel
Strand 4
B
188 197anti-parallel
Strand 5
B
250 254anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 173first strand
Strand 2
B
313 318anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
106 119anti-parallel
Strand 4
C
162 171anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
106 119anti-parallel
Strand 4
C
223 227anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 201anti-parallel
Strand 3
C
126 134anti-parallel
Strand 4
C
151 156anti-parallel
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