Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IJ2 entry

There are 8 chains in PDB entry 6IJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 22	ALA 257
E	G 503	G 504
B	LEU 22	ALA 257
F	G 503	G 504
C	LEU 22	ALA 257
G	G 503	G 504
D	LEU 22	ALA 257
H	G 503	G 504

There are 44 helices in PDB entry 6IJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	67	86	Right-handed alpha
Helix 3	AA3	A	108	118	Right-handed alpha
Helix 4	AA4	A	121	123	Right-handed 310
Helix 5	AA5	A	138	152	Right-handed alpha
Helix 6	AA6	A	165	171	Right-handed alpha
Helix 7	AA7	A	181	186	Right-handed alpha
Helix 8	AA8	A	187	190	Right-handed 310
Helix 9	AA9	A	191	208	Right-handed alpha
Helix 10	AB1	A	219	230	Right-handed alpha
Helix 11	AB2	A	251	256	Right-handed alpha
Helix 12	AB3	B	55	61	Right-handed alpha
Helix 13	AB4	B	67	87	Right-handed alpha
Helix 14	AB5	B	108	118	Right-handed alpha
Helix 15	AB6	B	121	123	Right-handed 310
Helix 16	AB7	B	138	152	Right-handed alpha
Helix 17	AB8	B	165	171	Right-handed alpha
Helix 18	AB9	B	181	186	Right-handed alpha
Helix 19	AC1	B	187	190	Right-handed 310
Helix 20	AC2	B	191	208	Right-handed alpha
Helix 21	AC3	B	219	230	Right-handed alpha
Helix 22	AC4	B	251	256	Right-handed alpha
Helix 23	AC5	C	55	61	Right-handed alpha
Helix 24	AC6	C	67	86	Right-handed alpha
Helix 25	AC7	C	104	107	Right-handed 310
Helix 26	AC8	C	108	118	Right-handed alpha
Helix 27	AC9	C	121	123	Right-handed 310
Helix 28	AD1	C	138	152	Right-handed alpha
Helix 29	AD2	C	165	171	Right-handed alpha
Helix 30	AD3	C	181	186	Right-handed alpha
Helix 31	AD4	C	191	208	Right-handed alpha
Helix 32	AD5	C	219	229	Right-handed alpha
Helix 33	AD6	C	252	256	Right-handed 310
Helix 34	AD7	D	55	61	Right-handed alpha
Helix 35	AD8	D	67	86	Right-handed alpha
Helix 36	AD9	D	107	118	Right-handed alpha
Helix 37	AE1	D	121	123	Right-handed 310
Helix 38	AE2	D	138	152	Right-handed alpha
Helix 39	AE3	D	165	171	Right-handed alpha
Helix 40	AE4	D	181	186	Right-handed alpha
Helix 41	AE5	D	187	190	Right-handed 310
Helix 42	AE6	D	191	208	Right-handed alpha
Helix 43	AE7	D	219	229	Right-handed alpha
Helix 44	AE8	D	251	255	Right-handed 310

There are 4 sheets in PDB entry 6IJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	27	35	anti-parallel
Strand 3	A	233	234	anti-parallel
Strand 4	A	211	214	parallel
Strand 5	A	177	180	parallel
Strand 6	A	154	160	parallel
Strand 7	A	125	129	parallel
Strand 8	A	91	96	parallel
Strand 9	A	41	49	parallel
Strand 10	A	27	35	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	27	35	anti-parallel
Strand 3	B	233	234	anti-parallel
Strand 4	B	211	214	parallel
Strand 5	B	177	180	parallel
Strand 6	B	154	160	parallel
Strand 7	B	125	129	parallel
Strand 8	B	91	96	parallel
Strand 9	B	40	49	parallel
Strand 10	B	27	35	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	27	35	anti-parallel
Strand 3	C	233	234	anti-parallel
Strand 4	C	211	214	parallel
Strand 5	C	177	180	parallel
Strand 6	C	154	160	parallel
Strand 7	C	125	129	parallel
Strand 8	C	91	96	parallel
Strand 9	C	40	49	parallel
Strand 10	C	27	35	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	244	first strand
Strand 2	D	27	35	anti-parallel
Strand 3	D	233	234	anti-parallel
Strand 4	D	211	214	parallel
Strand 5	D	177	180	parallel
Strand 6	D	154	160	parallel
Strand 7	D	125	129	parallel
Strand 8	D	91	96	parallel
Strand 9	D	40	49	parallel
Strand 10	D	27	35	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJ2