Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IJA entry

There are 4 chains in PDB entry 6IJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5LEU 435
B
 THR 6LEU 435
C
 THR 6LEU 435
D
 THR 6LEU 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 6IJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
44 49Right-handed 310
Helix 3
AA3
A
50 56Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
87 89Right-handed 310
Helix 6
AA6
A
90 99Right-handed alpha
Helix 7
AA7
A
101 111Right-handed alpha
Helix 8
AA8
A
127 137Right-handed alpha
Helix 9
AA9
A
149 158Right-handed alpha
Helix 10
AB1
A
165 174Right-handed alpha
Helix 11
AB2
A
187 198Right-handed alpha
Helix 12
AB3
A
226 235Right-handed alpha
Helix 13
AB4
A
255 270Right-handed alpha
Helix 14
AB5
A
300 304Right-handed 310
Helix 15
AB6
A
316 323Right-handed alpha
Helix 16
AB7
A
334 345Right-handed alpha
Helix 17
AB8
A
356 365Right-handed alpha
Helix 18
AB9
A
383 394Right-handed alpha
Helix 19
AC1
A
399 416Right-handed alpha
Helix 20
AC2
A
420 433Right-handed alpha
Helix 21
AC3
B
18 35Right-handed alpha
Helix 22
AC4
B
44 50Right-handed 310
Helix 23
AC5
B
51 56Right-handed alpha
Helix 24
AC6
B
82 86Right-handed 310
Helix 25
AC7
B
87 89Right-handed 310
Helix 26
AC8
B
90 100Right-handed alpha
Helix 27
AC9
B
101 111Right-handed alpha
Helix 28
AD1
B
127 137Right-handed alpha
Helix 29
AD2
B
149 158Right-handed alpha
Helix 30
AD3
B
165 174Right-handed alpha
Helix 31
AD4
B
187 198Right-handed alpha
Helix 32
AD5
B
226 235Right-handed alpha
Helix 33
AD6
B
255 269Right-handed alpha
Helix 34
AD7
B
316 323Right-handed alpha
Helix 35
AD8
B
334 344Right-handed alpha
Helix 36
AD9
B
356 365Right-handed alpha
Helix 37
AE1
B
383 394Right-handed alpha
Helix 38
AE2
B
399 416Right-handed alpha
Helix 39
AE3
B
420 433Right-handed alpha
Helix 40
AE4
C
18 35Right-handed alpha
Helix 41
AE5
C
44 49Right-handed 310
Helix 42
AE6
C
50 56Right-handed alpha
Helix 43
AE7
C
82 86Right-handed 310
Helix 44
AE8
C
87 89Right-handed 310
Helix 45
AE9
C
90 99Right-handed alpha
Helix 46
AF1
C
101 111Right-handed alpha
Helix 47
AF2
C
127 137Right-handed alpha
Helix 48
AF3
C
149 158Right-handed alpha
Helix 49
AF4
C
165 174Right-handed alpha
Helix 50
AF5
C
187 197Right-handed alpha
Helix 51
AF6
C
255 269Right-handed alpha
Helix 52
AF7
C
334 345Right-handed alpha
Helix 53
AF8
C
356 365Right-handed alpha
Helix 54
AF9
C
383 395Right-handed alpha
Helix 55
AG1
C
400 415Right-handed alpha
Helix 56
AG2
C
420 433Right-handed alpha
Helix 57
AG3
D
18 35Right-handed alpha
Helix 58
AG4
D
44 50Right-handed 310
Helix 59
AG5
D
51 56Right-handed alpha
Helix 60
AG6
D
82 86Right-handed 310
Helix 61
AG7
D
87 89Right-handed 310
Helix 62
AG8
D
90 99Right-handed alpha
Helix 63
AG9
D
101 111Right-handed alpha
Helix 64
AH1
D
127 137Right-handed alpha
Helix 65
AH2
D
149 158Right-handed alpha
Helix 66
AH3
D
165 174Right-handed alpha
Helix 67
AH4
D
187 198Right-handed alpha
Helix 68
AH5
D
255 269Right-handed alpha
Helix 69
AH6
D
300 305Right-handed alpha
Helix 70
AH7
D
316 322Right-handed alpha
Helix 71
AH8
D
334 345Right-handed alpha
Helix 72
AH9
D
356 365Right-handed alpha
Helix 73
AI1
D
383 393Right-handed alpha
Helix 74
AI2
D
401 415Right-handed alpha
Helix 75
AI3
D
420 433Right-handed alpha
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There are 8 sheets in PDB entry 6IJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
38 43parallel
Strand 3
A
10 14parallel
Strand 4
A
120 124parallel
Strand 5
A
141 146parallel
Strand 6
A
178 180parallel
Strand 7
A
204 206parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
272 277parallel
Strand 3
A
243 246parallel
Strand 4
A
326 331parallel
Strand 5
A
347 350parallel
Strand 6
A
371 373parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
38 43parallel
Strand 3
B
10 14parallel
Strand 4
B
120 124parallel
Strand 5
B
141 146parallel
Strand 6
B
178 180parallel
Strand 7
B
204 206parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 312first strand
Strand 2
B
272 277parallel
Strand 3
B
243 246parallel
Strand 4
B
326 331parallel
Strand 5
B
347 350parallel
Strand 6
B
371 373parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 67first strand
Strand 2
C
38 43parallel
Strand 3
C
10 14parallel
Strand 4
C
120 124parallel
Strand 5
C
141 146parallel
Strand 6
C
177 180parallel
Strand 7
C
204 206parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 331first strand
Strand 2
C
347 350parallel
Strand 3
C
371 373parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 67first strand
Strand 2
D
38 43parallel
Strand 3
D
10 14parallel
Strand 4
D
120 124parallel
Strand 5
D
141 146parallel
Strand 6
D
177 180parallel
Strand 7
D
204 206parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
309 311first strand
Strand 2
D
273 276parallel
Strand 3
D
244 246parallel
Strand 4
D
328 331parallel
Strand 5
D
347 350parallel
Strand 6
D
371 373parallel
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