Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IJC entry

There are 2 chains in PDB entry 6IJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PRO 582
B
 THR 2MET 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6IJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
28 32Right-handed 310
Helix 4
AA4
A
33 51Right-handed alpha
Helix 5
AA5
A
53 63Right-handed alpha
Helix 6
AA6
A
76 87Right-handed alpha
Helix 7
AA7
A
95 99Right-handed 310
Helix 8
AA8
A
104 119Right-handed alpha
Helix 9
AA9
A
119 140Right-handed alpha
Helix 10
AB1
A
141 154Right-handed alpha
Helix 11
AB2
A
171 175Right-handed 310
Helix 12
AB3
A
221 223Right-handed 310
Helix 13
AB4
A
281 288Right-handed alpha
Helix 14
AB5
A
289 318Right-handed alpha
Helix 15
AB6
A
341 374Right-handed alpha
Helix 16
AB7
A
377 410Right-handed alpha
Helix 17
AB8
A
411 419Right-handed 310
Helix 18
AB9
A
420 430Right-handed alpha
Helix 19
AC1
A
431 433Right-handed 310
Helix 20
AC2
A
437 448Right-handed alpha
Helix 21
AC3
A
451 454Right-handed 310
Helix 22
AC4
A
455 473Right-handed alpha
Helix 23
AC5
A
478 503Right-handed alpha
Helix 24
AC6
A
506 513Right-handed alpha
Helix 25
AC7
A
513 543Right-handed alpha
Helix 26
AC8
A
547 565Right-handed alpha
Helix 27
AC9
A
567 578Right-handed alpha
Helix 28
AD1
B
7 18Right-handed alpha
Helix 29
AD2
B
20 24Right-handed 310
Helix 30
AD3
B
28 32Right-handed 310
Helix 31
AD4
B
33 51Right-handed alpha
Helix 32
AD5
B
52 54Right-handed 310
Helix 33
AD6
B
55 63Right-handed alpha
Helix 34
AD7
B
76 87Right-handed alpha
Helix 35
AD8
B
88 92Right-handed 310
Helix 36
AD9
B
95 99Right-handed 310
Helix 37
AE1
B
104 119Right-handed alpha
Helix 38
AE2
B
119 140Right-handed alpha
Helix 39
AE3
B
141 154Right-handed alpha
Helix 40
AE4
B
171 175Right-handed 310
Helix 41
AE5
B
220 223Right-handed 310
Helix 42
AE6
B
281 318Right-handed alpha
Helix 43
AE7
B
341 376Right-handed alpha
Helix 44
AE8
B
377 410Right-handed alpha
Helix 45
AE9
B
411 419Right-handed 310
Helix 46
AF1
B
420 431Right-handed alpha
Helix 47
AF2
B
437 448Right-handed alpha
Helix 48
AF3
B
451 454Right-handed 310
Helix 49
AF4
B
455 473Right-handed alpha
Helix 50
AF5
B
474 477Right-handed 310
Helix 51
AF6
B
478 506Right-handed alpha
Helix 52
AF7
B
506 513Right-handed alpha
Helix 53
AF8
B
513 543Right-handed alpha
Helix 54
AF9
B
547 565Right-handed alpha
Helix 55
AG1
B
567 578Right-handed alpha
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There are 8 sheets in PDB entry 6IJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
70 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
206 214parallel
Strand 3
A
178 181parallel
Strand 4
A
187 197anti-parallel
Strand 5
A
263 276anti-parallel
Strand 6
A
247 252anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
206 214parallel
Strand 3
A
225 231anti-parallel
Strand 4
A
263 276anti-parallel
Strand 5
A
247 252anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
241 244anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
70 72anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 162first strand
Strand 2
B
206 214parallel
Strand 3
B
178 181parallel
Strand 4
B
187 197anti-parallel
Strand 5
B
263 276anti-parallel
Strand 6
B
247 252anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 162first strand
Strand 2
B
206 214parallel
Strand 3
B
225 231anti-parallel
Strand 4
B
263 276anti-parallel
Strand 5
B
247 252anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
241 244anti-parallel
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