Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IJD entry

There are 2 chains in PDB entry 6IJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7LEU 435
B
 LYS 7LEU 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 6IJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
44 50Right-handed 310
Helix 3
AA3
A
51 58Right-handed alpha
Helix 4
AA4
A
87 89Right-handed 310
Helix 5
AA5
A
90 100Right-handed alpha
Helix 6
AA6
A
101 111Right-handed alpha
Helix 7
AA7
A
127 138Right-handed alpha
Helix 8
AA8
A
149 158Right-handed alpha
Helix 9
AA9
A
165 175Right-handed alpha
Helix 10
AB1
A
183 186Right-handed 310
Helix 11
AB2
A
187 198Right-handed alpha
Helix 12
AB3
A
226 236Right-handed alpha
Helix 13
AB4
A
255 269Right-handed alpha
Helix 14
AB5
A
316 323Right-handed alpha
Helix 15
AB6
A
334 345Right-handed alpha
Helix 16
AB7
A
356 365Right-handed alpha
Helix 17
AB8
A
383 393Right-handed alpha
Helix 18
AB9
A
394 396Right-handed 310
Helix 19
AC1
A
399 417Right-handed alpha
Helix 20
AC2
A
420 435Right-handed alpha
Helix 21
AC3
B
18 35Right-handed alpha
Helix 22
AC4
B
44 49Right-handed alpha
Helix 23
AC5
B
51 58Right-handed alpha
Helix 24
AC6
B
87 89Right-handed 310
Helix 25
AC7
B
90 100Right-handed alpha
Helix 26
AC8
B
101 111Right-handed alpha
Helix 27
AC9
B
127 138Right-handed alpha
Helix 28
AD1
B
149 159Right-handed alpha
Helix 29
AD2
B
162 164Right-handed 310
Helix 30
AD3
B
165 175Right-handed alpha
Helix 31
AD4
B
183 186Right-handed 310
Helix 32
AD5
B
187 198Right-handed alpha
Helix 33
AD6
B
226 236Right-handed alpha
Helix 34
AD7
B
256 269Right-handed alpha
Helix 35
AD8
B
316 323Right-handed alpha
Helix 36
AD9
B
334 344Right-handed alpha
Helix 37
AE1
B
356 365Right-handed alpha
Helix 38
AE2
B
383 394Right-handed alpha
Helix 39
AE3
B
399 417Right-handed alpha
Helix 40
AE4
B
420 435Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6IJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
38 43parallel
Strand 3
A
10 14parallel
Strand 4
A
120 124parallel
Strand 5
A
141 146parallel
Strand 6
A
177 180parallel
Strand 7
A
204 206parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
273 276parallel
Strand 3
A
243 246parallel
Strand 4
A
326 331parallel
Strand 5
A
347 350parallel
Strand 6
A
372 373parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
38 43parallel
Strand 3
B
10 14parallel
Strand 4
B
120 124parallel
Strand 5
B
141 146parallel
Strand 6
B
177 180parallel
Strand 7
B
204 206parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
273 276parallel
Strand 3
B
243 246parallel
Strand 4
B
326 331parallel
Strand 5
B
347 350parallel
Strand 6
B
372 373parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il