Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IJF entry

There are 4 chains in PDB entry 6IJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0GLU 100
B
 GLU 2GLU 100
C
 MET 1SER 163
D
 MET 1SER 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6IJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
26 50Right-handed alpha
Helix 3
AA3
A
61 76Right-handed alpha
Helix 4
AA4
A
77 83Right-handed 310
Helix 5
AA5
A
84 97Right-handed alpha
Helix 6
AA6
B
8 17Right-handed alpha
Helix 7
AA7
B
26 50Right-handed alpha
Helix 8
AA8
B
61 76Right-handed alpha
Helix 9
AA9
B
77 83Right-handed 310
Helix 10
AB1
B
84 97Right-handed alpha
Helix 11
AB2
C
4 11Right-handed alpha
Helix 12
AB3
C
24 33Right-handed alpha
Helix 13
AB4
C
34 38Right-handed 310
Helix 14
AB5
C
40 44Right-handed 310
Helix 15
AB6
C
46 58Right-handed alpha
Helix 16
AB7
C
82 92Right-handed alpha
Helix 17
AB8
C
106 112Right-handed alpha
Helix 18
AB9
D
4 11Right-handed alpha
Helix 19
AC1
D
24 33Right-handed alpha
Helix 20
AC2
D
34 38Right-handed 310
Helix 21
AC3
D
40 44Right-handed 310
Helix 22
AC4
D
46 58Right-handed alpha
Helix 23
AC5
D
82 92Right-handed alpha
Helix 24
AC6
D
106 112Right-handed alpha
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There are 4 sheets in PDB entry 6IJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
78 79anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
154 161anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
130 136anti-parallel
Strand 5
C
143 144anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 68first strand
Strand 2
D
78 79anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 102first strand
Strand 2
D
154 161anti-parallel
Strand 3
D
115 121anti-parallel
Strand 4
D
130 137anti-parallel
Strand 5
D
142 144anti-parallel
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