Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IJJ entry

There are 18 chains in PDB entry 6IJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	GLY 751
B	LYS 4	PHE 734
C	ALA 2	TYR 81
D	ALA 103	GLU 246
E	LYS 79	ALA 142
F	ASP 63	PRO 226
I	SER 73	PRO 104
J	MET 1	PHE 41
K	PHE 76	LEU 160
L	VAL 127	THR 251
1	LYS 55	PHE 247
a	LYS 55	PHE 248
3	GLN 44	GLY 264
4	ASP 81	LEU 290
5	ASP 48	SER 273
6	SER 89	PRO 318
7	VAL 29	ALA 241
8	ARG 56	PRO 270

There are148 helices in PDB entry 6IJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	46	55	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed alpha
Helix 4	AA4	A	65	98	Right-handed alpha
Helix 5	AA5	A	100	105	Right-handed alpha
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	143	152	Right-handed alpha
Helix 8	AA8	A	155	183	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	204	Right-handed alpha
Helix 11	AB2	A	205	220	Right-handed alpha
Helix 12	AB3	A	220	231	Right-handed alpha
Helix 13	AB4	A	240	246	Right-handed alpha
Helix 14	AB5	A	246	254	Right-handed alpha
Helix 15	AB6	A	256	260	Right-handed 310
Helix 16	AB7	A	261	266	Right-handed alpha
Helix 17	AB8	A	268	275	Right-handed 310
Helix 18	AB9	A	290	309	Right-handed alpha
Helix 19	AC1	A	321	327	Right-handed alpha
Helix 20	AC2	A	340	345	Right-handed alpha
Helix 21	AC3	A	348	374	Right-handed alpha
Helix 22	AC4	A	383	415	Right-handed alpha
Helix 23	AC5	A	425	432	Right-handed alpha
Helix 24	AC6	A	433	465	Right-handed alpha
Helix 25	AC7	A	467	471	Right-handed 310
Helix 26	AC8	A	481	493	Right-handed alpha
Helix 27	AC9	A	493	498	Right-handed alpha
Helix 28	AD1	A	529	556	Right-handed alpha
Helix 29	AD2	A	565	570	Right-handed alpha
Helix 30	AD3	A	587	618	Right-handed alpha
Helix 31	AD4	A	634	639	Right-handed alpha
Helix 32	AD5	A	641	648	Right-handed alpha
Helix 33	AD6	A	649	654	Right-handed alpha
Helix 34	AD7	A	655	657	Right-handed 310
Helix 35	AD8	A	665	688	Right-handed alpha
Helix 36	AD9	A	689	707	Right-handed alpha
Helix 37	AE1	A	719	751	Right-handed alpha
Helix 38	AE2	B	10	15	Right-handed alpha
Helix 39	AE3	B	19	28	Right-handed alpha
Helix 40	AE4	B	31	35	Right-handed 310
Helix 41	AE5	B	39	73	Right-handed alpha
Helix 42	AE6	B	74	81	Right-handed alpha
Helix 43	AE7	B	98	105	Right-handed alpha
Helix 44	AE8	B	120	127	Right-handed alpha
Helix 45	AE9	B	133	157	Right-handed alpha
Helix 46	AF1	B	165	170	Right-handed alpha
Helix 47	AF2	B	171	182	Right-handed alpha
Helix 48	AF3	B	184	198	Right-handed alpha
Helix 49	AF4	B	198	204	Right-handed alpha
Helix 50	AF5	B	223	229	Right-handed alpha
Helix 51	AF6	B	230	236	Right-handed 310
Helix 52	AF7	B	270	290	Right-handed alpha
Helix 53	AF8	B	301	306	Right-handed alpha
Helix 54	AF9	B	307	309	Right-handed 310
Helix 55	AG1	B	323	328	Right-handed alpha
Helix 56	AG2	B	330	356	Right-handed alpha
Helix 57	AG3	B	365	398	Right-handed alpha
Helix 58	AG4	B	407	415	Right-handed alpha
Helix 59	AG5	B	415	447	Right-handed alpha
Helix 60	AG6	B	449	453	Right-handed 310
Helix 61	AG7	B	458	469	Right-handed alpha
Helix 62	AG8	B	484	489	Right-handed alpha
Helix 63	AG9	B	494	503	Right-handed alpha
Helix 64	AH1	B	514	541	Right-handed alpha
Helix 65	AH2	B	550	554	Right-handed 310
Helix 66	AH3	B	573	605	Right-handed alpha
Helix 67	AH4	B	606	614	Right-handed alpha
Helix 68	AH5	B	616	623	Right-handed alpha
Helix 69	AH6	B	624	629	Right-handed alpha
Helix 70	AH7	B	632	634	Right-handed 310
Helix 71	AH8	B	644	667	Right-handed alpha
Helix 72	AH9	B	670	686	Right-handed alpha
Helix 73	AI1	B	702	732	Right-handed alpha
Helix 74	AI2	C	15	21	Right-handed alpha
Helix 75	AI3	C	53	58	Right-handed alpha
Helix 76	AI4	D	126	132	Right-handed alpha
Helix 77	AI5	D	168	183	Right-handed alpha
Helix 78	AI6	D	225	229	Right-handed 310
Helix 79	AI7	F	73	92	Right-handed alpha
Helix 80	AI8	F	98	121	Right-handed alpha
Helix 81	AI9	F	151	176	Right-handed alpha
Helix 82	AJ1	F	181	186	Right-handed alpha
Helix 83	AJ2	F	188	198	Right-handed alpha
Helix 84	AJ3	F	201	211	Right-handed alpha
Helix 85	AJ4	I	78	83	Right-handed alpha
Helix 86	AJ5	I	86	98	Right-handed alpha
Helix 87	AJ6	J	2	9	Right-handed alpha
Helix 88	AJ7	J	10	33	Right-handed alpha
Helix 89	AJ8	K	81	98	Right-handed alpha
Helix 90	AJ9	K	132	158	Right-handed alpha
Helix 91	AK1	L	129	133	Right-handed 310
Helix 92	AK2	L	142	166	Right-handed alpha
Helix 93	AK3	L	174	202	Right-handed alpha
Helix 94	AK4	L	225	250	Right-handed alpha
Helix 95	AK5	1	87	119	Right-handed alpha
Helix 96	AK6	1	146	158	Right-handed alpha
Helix 97	AK7	1	158	167	Right-handed alpha
Helix 98	AK8	1	189	219	Right-handed alpha
Helix 99	AK9	1	221	232	Right-handed alpha
Helix 100	AL1	a	87	119	Right-handed alpha
Helix 101	AL2	a	146	158	Right-handed alpha
Helix 102	AL3	a	158	167	Right-handed alpha
Helix 103	AL4	a	189	219	Right-handed alpha
Helix 104	AL5	a	221	232	Right-handed alpha
Helix 105	AL6	3	79	82	Right-handed 310
Helix 106	AL7	3	83	114	Right-handed alpha
Helix 107	AL8	3	118	122	Right-handed 310
Helix 108	AL9	3	124	128	Right-handed 310
Helix 109	AM1	3	143	168	Right-handed alpha
Helix 110	AM2	3	179	186	Right-handed 310
Helix 111	AM3	3	206	239	Right-handed alpha
Helix 112	AM4	3	241	252	Right-handed alpha
Helix 113	AM5	3	258	262	Right-handed 310
Helix 114	AM6	4	111	114	Right-handed 310
Helix 115	AM7	4	115	150	Right-handed alpha
Helix 116	AM8	4	171	196	Right-handed alpha
Helix 117	AM9	4	221	225	Right-handed 310
Helix 118	AN1	4	233	261	Right-handed alpha
Helix 119	AN2	4	266	276	Right-handed alpha
Helix 120	AN3	4	281	290	Right-handed alpha
Helix 121	AN4	5	76	79	Right-handed 310
Helix 122	AN5	5	80	112	Right-handed alpha
Helix 123	AN6	5	118	126	Right-handed 310
Helix 124	AN7	5	127	131	Right-handed 310
Helix 125	AN8	5	134	159	Right-handed alpha
Helix 126	AN9	5	195	223	Right-handed alpha
Helix 127	AO1	5	227	238	Right-handed alpha
Helix 128	AO2	6	121	153	Right-handed alpha
Helix 129	AO3	6	170	195	Right-handed alpha
Helix 130	AO4	6	229	256	Right-handed alpha
Helix 131	AO5	6	263	272	Right-handed alpha
Helix 132	AO6	6	273	276	Right-handed 310
Helix 133	AO7	6	277	282	Right-handed alpha
Helix 134	AO8	7	61	93	Right-handed alpha
Helix 135	AO9	7	104	112	Right-handed alpha
Helix 136	AP1	7	116	140	Right-handed alpha
Helix 137	AP2	7	166	171	Right-handed alpha
Helix 138	AP3	7	179	211	Right-handed alpha
Helix 139	AP4	7	214	225	Right-handed alpha
Helix 140	AP5	7	230	234	Right-handed 310
Helix 141	AP6	8	66	70	Right-handed 310
Helix 142	AP7	8	71	76	Right-handed alpha
Helix 143	AP8	8	91	125	Right-handed alpha
Helix 144	AP9	8	147	172	Right-handed alpha
Helix 145	AQ1	8	184	189	Right-handed 310
Helix 146	AQ2	8	199	203	Right-handed 310
Helix 147	AQ3	8	213	243	Right-handed alpha
Helix 148	AQ4	8	245	256	Right-handed alpha

There are 16 sheets in PDB entry 6IJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	221	222	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	166	first strand
Strand 2	D	135	141	anti-parallel
Strand 3	D	188	192	anti-parallel
Strand 4	D	198	200	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	148	first strand
Strand 2	D	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	134	first strand
Strand 2	E	117	120	anti-parallel
Strand 3	E	102	108	anti-parallel
Strand 4	E	88	91	anti-parallel
Strand 5	E	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	124	125	anti-parallel
Strand 3	F	131	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	106	108	first strand
Strand 2	K	114	116	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	136	138	first strand
Strand 2	1	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	136	138	first strand
Strand 2	a	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	258	259	first strand
Strand 2	5	262	263	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	283	285	first strand
Strand 2	6	288	290	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	299	300	first strand
Strand 2	6	307	308	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJJ