Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IJK entry

There are 2 chains in PDB entry 6IJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7GLU 293
B
 SER 7GLU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6IJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 30Right-handed 310
Helix 2
AA2
A
34 51Right-handed alpha
Helix 3
AA3
A
95 106Right-handed alpha
Helix 4
AA4
A
121 126Right-handed alpha
Helix 5
AA5
A
144 149Right-handed 310
Helix 6
AA6
A
155 165Right-handed alpha
Helix 7
AA7
A
165 176Right-handed alpha
Helix 8
AA8
A
181 187Right-handed alpha
Helix 9
AA9
A
198 214Right-handed alpha
Helix 10
AB1
A
215 230Right-handed alpha
Helix 11
AB2
A
234 251Right-handed alpha
Helix 12
AB3
A
252 264Right-handed alpha
Helix 13
AB4
B
26 30Right-handed 310
Helix 14
AB5
B
34 51Right-handed alpha
Helix 15
AB6
B
95 106Right-handed alpha
Helix 16
AB7
B
122 124Right-handed 310
Helix 17
AB8
B
144 149Right-handed 310
Helix 18
AB9
B
155 165Right-handed alpha
Helix 19
AC1
B
165 176Right-handed alpha
Helix 20
AC2
B
181 187Right-handed alpha
Helix 21
AC3
B
195 197Right-handed 310
Helix 22
AC4
B
198 214Right-handed alpha
Helix 23
AC5
B
215 230Right-handed alpha
Helix 24
AC6
B
234 251Right-handed alpha
Helix 25
AC7
B
252 264Right-handed alpha
Helix 26
AC8
B
273 278Right-handed alpha
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There are 4 sheets in PDB entry 6IJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
56 61parallel
Strand 4
A
111 115parallel
Strand 5
A
132 136parallel
Strand 6
A
192 194parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
140 142parallel
Strand 3
A
178 180anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
56 61parallel
Strand 4
B
111 115parallel
Strand 5
B
132 136parallel
Strand 6
B
192 194parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
140 142parallel
Strand 3
B
178 180anti-parallel
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