Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IJO entry

There are 23 chains in PDB entry 6IJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 11GLY 751
B
LYS 4PHE 734
C
ALA 2TYR 81
D
ALA 103GLU 246
E
LYS 79ALA 142
F
ASP 63PRO 226
G
LEU 65LEU 158
H
ILE 101VAL 151
I
SER 73PRO 104
J
MET 1PHE 41
K
PHE 76LEU 160
L
VAL 127THR 251
1
LYS 55PHE 247
a
LYS 55PHE 248
3
GLN 44GLY 264
4
ASP 81LEU 290
5
ASP 48SER 273
6
SER 89PRO 318
7
VAL 29ALA 241
8
ARG 56PRO 270
2
ARG 9THR 181
9
PRO 29HIS 205
X
ALA 1ALA 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are162 helices in PDB entry 6IJO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
46 55Right-handed alpha
Helix 3
AA3
A
58 63Right-handed alpha
Helix 4
AA4
A
65 97Right-handed alpha
Helix 5
AA5
A
100 107Right-handed alpha
Helix 6
AA6
A
123 128Right-handed 310
Helix 7
AA7
A
143 152Right-handed alpha
Helix 8
AA8
A
155 180Right-handed alpha
Helix 9
AA9
A
187 192Right-handed alpha
Helix 10
AB1
A
193 204Right-handed alpha
Helix 11
AB2
A
205 220Right-handed alpha
Helix 12
AB3
A
220 231Right-handed alpha
Helix 13
AB4
A
241 246Right-handed alpha
Helix 14
AB5
A
246 254Right-handed alpha
Helix 15
AB6
A
256 260Right-handed 310
Helix 16
AB7
A
261 266Right-handed alpha
Helix 17
AB8
A
268 273Right-handed 310
Helix 18
AB9
A
290 309Right-handed alpha
Helix 19
AC1
A
321 329Right-handed alpha
Helix 20
AC2
A
340 345Right-handed alpha
Helix 21
AC3
A
348 373Right-handed alpha
Helix 22
AC4
A
383 415Right-handed alpha
Helix 23
AC5
A
425 433Right-handed alpha
Helix 24
AC6
A
433 465Right-handed alpha
Helix 25
AC7
A
467 471Right-handed 310
Helix 26
AC8
A
481 492Right-handed alpha
Helix 27
AC9
A
493 498Right-handed alpha
Helix 28
AD1
A
529 556Right-handed alpha
Helix 29
AD2
A
565 570Right-handed alpha
Helix 30
AD3
A
587 618Right-handed alpha
Helix 31
AD4
A
641 648Right-handed alpha
Helix 32
AD5
A
652 657Right-handed 310
Helix 33
AD6
A
665 688Right-handed alpha
Helix 34
AD7
A
689 707Right-handed alpha
Helix 35
AD8
A
719 751Right-handed alpha
Helix 36
AD9
B
10 15Right-handed alpha
Helix 37
AE1
B
19 28Right-handed alpha
Helix 38
AE2
B
31 35Right-handed 310
Helix 39
AE3
B
39 73Right-handed alpha
Helix 40
AE4
B
74 81Right-handed alpha
Helix 41
AE5
B
99 104Right-handed alpha
Helix 42
AE6
B
120 128Right-handed alpha
Helix 43
AE7
B
132 157Right-handed alpha
Helix 44
AE8
B
165 170Right-handed alpha
Helix 45
AE9
B
171 182Right-handed alpha
Helix 46
AF1
B
184 198Right-handed alpha
Helix 47
AF2
B
198 204Right-handed alpha
Helix 48
AF3
B
223 229Right-handed alpha
Helix 49
AF4
B
230 236Right-handed 310
Helix 50
AF5
B
270 289Right-handed alpha
Helix 51
AF6
B
301 305Right-handed 310
Helix 52
AF7
B
323 329Right-handed alpha
Helix 53
AF8
B
330 355Right-handed alpha
Helix 54
AF9
B
365 398Right-handed alpha
Helix 55
AG1
B
407 415Right-handed alpha
Helix 56
AG2
B
415 447Right-handed alpha
Helix 57
AG3
B
449 453Right-handed 310
Helix 58
AG4
B
458 469Right-handed alpha
Helix 59
AG5
B
484 489Right-handed alpha
Helix 60
AG6
B
494 503Right-handed alpha
Helix 61
AG7
B
514 541Right-handed alpha
Helix 62
AG8
B
550 555Right-handed alpha
Helix 63
AG9
B
572 605Right-handed alpha
Helix 64
AH1
B
606 614Right-handed alpha
Helix 65
AH2
B
616 623Right-handed alpha
Helix 66
AH3
B
624 629Right-handed alpha
Helix 67
AH4
B
629 634Right-handed alpha
Helix 68
AH5
B
644 667Right-handed alpha
Helix 69
AH6
B
670 685Right-handed alpha
Helix 70
AH7
B
702 734Right-handed alpha
Helix 71
AH8
C
15 21Right-handed alpha
Helix 72
AH9
D
127 132Right-handed alpha
Helix 73
AI1
D
169 181Right-handed alpha
Helix 74
AI2
D
225 229Right-handed 310
Helix 75
AI3
F
73 92Right-handed alpha
Helix 76
AI4
F
98 121Right-handed alpha
Helix 77
AI5
F
151 173Right-handed alpha
Helix 78
AI6
F
181 186Right-handed alpha
Helix 79
AI7
F
188 199Right-handed alpha
Helix 80
AI8
F
201 213Right-handed alpha
Helix 81
AI9
G
69 79Right-handed alpha
Helix 82
AJ1
G
80 85Right-handed alpha
Helix 83
AJ2
G
86 91Right-handed alpha
Helix 84
AJ3
G
129 151Right-handed alpha
Helix 85
AJ4
H
104 124Right-handed alpha
Helix 86
AJ5
I
74 77Right-handed 310
Helix 87
AJ6
I
78 83Right-handed alpha
Helix 88
AJ7
I
86 98Right-handed alpha
Helix 89
AJ8
J
2 8Right-handed alpha
Helix 90
AJ9
J
10 33Right-handed alpha
Helix 91
AK1
K
79 98Right-handed alpha
Helix 92
AK2
K
132 158Right-handed alpha
Helix 93
AK3
L
129 133Right-handed 310
Helix 94
AK4
L
142 154Right-handed alpha
Helix 95
AK5
L
158 166Right-handed alpha
Helix 96
AK6
L
177 202Right-handed alpha
Helix 97
AK7
L
227 250Right-handed alpha
Helix 98
AK8
1
87 119Right-handed alpha
Helix 99
AK9
1
146 166Right-handed alpha
Helix 100
AL1
1
189 218Right-handed alpha
Helix 101
AL2
1
221 232Right-handed alpha
Helix 102
AL3
a
87 119Right-handed alpha
Helix 103
AL4
a
146 166Right-handed alpha
Helix 104
AL5
a
189 218Right-handed alpha
Helix 105
AL6
a
221 232Right-handed alpha
Helix 106
AL7
3
51 55Right-handed 310
Helix 107
AL8
3
79 82Right-handed 310
Helix 108
AL9
3
83 106Right-handed alpha
Helix 109
AM1
3
106 114Right-handed alpha
Helix 110
AM2
3
118 122Right-handed 310
Helix 111
AM3
3
124 128Right-handed 310
Helix 112
AM4
3
145 168Right-handed alpha
Helix 113
AM5
3
179 183Right-handed 310
Helix 114
AM6
3
206 239Right-handed alpha
Helix 115
AM7
3
241 252Right-handed alpha
Helix 116
AM8
3
258 262Right-handed 310
Helix 117
AM9
4
115 149Right-handed alpha
Helix 118
AN1
4
160 164Right-handed 310
Helix 119
AN2
4
171 196Right-handed alpha
Helix 120
AN3
4
221 225Right-handed 310
Helix 121
AN4
4
233 262Right-handed alpha
Helix 122
AN5
4
268 276Right-handed alpha
Helix 123
AN6
4
281 290Right-handed alpha
Helix 124
AN7
5
80 112Right-handed alpha
Helix 125
AN8
5
122 126Right-handed 310
Helix 126
AN9
5
134 159Right-handed alpha
Helix 127
AO1
5
195 223Right-handed alpha
Helix 128
AO2
5
227 238Right-handed alpha
Helix 129
AO3
6
121 153Right-handed alpha
Helix 130
AO4
6
170 195Right-handed alpha
Helix 131
AO5
6
229 256Right-handed alpha
Helix 132
AO6
6
263 272Right-handed alpha
Helix 133
AO7
6
277 282Right-handed alpha
Helix 134
AO8
7
63 93Right-handed alpha
Helix 135
AO9
7
104 113Right-handed alpha
Helix 136
AP1
7
117 141Right-handed alpha
Helix 137
AP2
7
166 171Right-handed alpha
Helix 138
AP3
7
180 211Right-handed alpha
Helix 139
AP4
7
214 225Right-handed alpha
Helix 140
AP5
7
230 234Right-handed 310
Helix 141
AP6
8
66 70Right-handed 310
Helix 142
AP7
8
91 114Right-handed alpha
Helix 143
AP8
8
117 125Right-handed alpha
Helix 144
AP9
8
147 172Right-handed alpha
Helix 145
AQ1
8
184 190Right-handed 310
Helix 146
AQ2
8
199 203Right-handed 310
Helix 147
AQ3
8
213 241Right-handed alpha
Helix 148
AQ4
8
245 256Right-handed alpha
Helix 149
AQ5
2
40 68Right-handed alpha
Helix 150
AQ6
2
75 80Right-handed alpha
Helix 151
AQ7
2
87 98Right-handed alpha
Helix 152
AQ8
2
98 111Right-handed alpha
Helix 153
AQ9
2
134 159Right-handed alpha
Helix 154
AR1
2
164 173Right-handed alpha
Helix 155
AR2
9
62 83Right-handed alpha
Helix 156
AR3
9
85 90Right-handed alpha
Helix 157
AR4
9
111 128Right-handed alpha
Helix 158
AR5
9
129 131Right-handed 310
Helix 159
AR6
9
153 173Right-handed alpha
Helix 160
AR7
9
185 193Right-handed alpha
Helix 161
AR8
9
198 202Right-handed 310
Helix 162
AR9
X
2 25Right-handed alpha
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There are 15 sheets in PDB entry 6IJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 19first strand
Strand 2
A
184 186anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 116first strand
Strand 2
A
138 139anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
516 517first strand
Strand 2
A
520 521anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
455 456first strand
Strand 2
F
132 133parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 5first strand
Strand 2
C
67 68anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
27 30first strand
Strand 2
C
38 41anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
160 166first strand
Strand 2
D
135 141anti-parallel
Strand 3
D
188 192anti-parallel
Strand 4
D
198 200anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
145 147first strand
Strand 2
D
155 157anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
131 134first strand
Strand 2
E
117 120anti-parallel
Strand 3
E
102 108anti-parallel
Strand 4
E
88 91anti-parallel
Strand 5
E
139 141anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
68 69first strand
Strand 2
F
124 125anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
106 108first strand
Strand 2
K
114 116anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
137 138first strand
Strand 2
1
141 142anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
137 138first strand
Strand 2
a
141 142anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
6
283 285first strand
Strand 2
6
288 290anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
6
299 300first strand
Strand 2
6
307 308anti-parallel
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