Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IJO entry

There are 23 chains in PDB entry 6IJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	GLY 751
B	LYS 4	PHE 734
C	ALA 2	TYR 81
D	ALA 103	GLU 246
E	LYS 79	ALA 142
F	ASP 63	PRO 226
G	LEU 65	LEU 158
H	ILE 101	VAL 151
I	SER 73	PRO 104
J	MET 1	PHE 41
K	PHE 76	LEU 160
L	VAL 127	THR 251
1	LYS 55	PHE 247
a	LYS 55	PHE 248
3	GLN 44	GLY 264
4	ASP 81	LEU 290
5	ASP 48	SER 273
6	SER 89	PRO 318
7	VAL 29	ALA 241
8	ARG 56	PRO 270
2	ARG 9	THR 181
9	PRO 29	HIS 205
X	ALA 1	ALA 26

There are162 helices in PDB entry 6IJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	46	55	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed alpha
Helix 4	AA4	A	65	97	Right-handed alpha
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	143	152	Right-handed alpha
Helix 8	AA8	A	155	180	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	204	Right-handed alpha
Helix 11	AB2	A	205	220	Right-handed alpha
Helix 12	AB3	A	220	231	Right-handed alpha
Helix 13	AB4	A	241	246	Right-handed alpha
Helix 14	AB5	A	246	254	Right-handed alpha
Helix 15	AB6	A	256	260	Right-handed 310
Helix 16	AB7	A	261	266	Right-handed alpha
Helix 17	AB8	A	268	273	Right-handed 310
Helix 18	AB9	A	290	309	Right-handed alpha
Helix 19	AC1	A	321	329	Right-handed alpha
Helix 20	AC2	A	340	345	Right-handed alpha
Helix 21	AC3	A	348	373	Right-handed alpha
Helix 22	AC4	A	383	415	Right-handed alpha
Helix 23	AC5	A	425	433	Right-handed alpha
Helix 24	AC6	A	433	465	Right-handed alpha
Helix 25	AC7	A	467	471	Right-handed 310
Helix 26	AC8	A	481	492	Right-handed alpha
Helix 27	AC9	A	493	498	Right-handed alpha
Helix 28	AD1	A	529	556	Right-handed alpha
Helix 29	AD2	A	565	570	Right-handed alpha
Helix 30	AD3	A	587	618	Right-handed alpha
Helix 31	AD4	A	641	648	Right-handed alpha
Helix 32	AD5	A	652	657	Right-handed 310
Helix 33	AD6	A	665	688	Right-handed alpha
Helix 34	AD7	A	689	707	Right-handed alpha
Helix 35	AD8	A	719	751	Right-handed alpha
Helix 36	AD9	B	10	15	Right-handed alpha
Helix 37	AE1	B	19	28	Right-handed alpha
Helix 38	AE2	B	31	35	Right-handed 310
Helix 39	AE3	B	39	73	Right-handed alpha
Helix 40	AE4	B	74	81	Right-handed alpha
Helix 41	AE5	B	99	104	Right-handed alpha
Helix 42	AE6	B	120	128	Right-handed alpha
Helix 43	AE7	B	132	157	Right-handed alpha
Helix 44	AE8	B	165	170	Right-handed alpha
Helix 45	AE9	B	171	182	Right-handed alpha
Helix 46	AF1	B	184	198	Right-handed alpha
Helix 47	AF2	B	198	204	Right-handed alpha
Helix 48	AF3	B	223	229	Right-handed alpha
Helix 49	AF4	B	230	236	Right-handed 310
Helix 50	AF5	B	270	289	Right-handed alpha
Helix 51	AF6	B	301	305	Right-handed 310
Helix 52	AF7	B	323	329	Right-handed alpha
Helix 53	AF8	B	330	355	Right-handed alpha
Helix 54	AF9	B	365	398	Right-handed alpha
Helix 55	AG1	B	407	415	Right-handed alpha
Helix 56	AG2	B	415	447	Right-handed alpha
Helix 57	AG3	B	449	453	Right-handed 310
Helix 58	AG4	B	458	469	Right-handed alpha
Helix 59	AG5	B	484	489	Right-handed alpha
Helix 60	AG6	B	494	503	Right-handed alpha
Helix 61	AG7	B	514	541	Right-handed alpha
Helix 62	AG8	B	550	555	Right-handed alpha
Helix 63	AG9	B	572	605	Right-handed alpha
Helix 64	AH1	B	606	614	Right-handed alpha
Helix 65	AH2	B	616	623	Right-handed alpha
Helix 66	AH3	B	624	629	Right-handed alpha
Helix 67	AH4	B	629	634	Right-handed alpha
Helix 68	AH5	B	644	667	Right-handed alpha
Helix 69	AH6	B	670	685	Right-handed alpha
Helix 70	AH7	B	702	734	Right-handed alpha
Helix 71	AH8	C	15	21	Right-handed alpha
Helix 72	AH9	D	127	132	Right-handed alpha
Helix 73	AI1	D	169	181	Right-handed alpha
Helix 74	AI2	D	225	229	Right-handed 310
Helix 75	AI3	F	73	92	Right-handed alpha
Helix 76	AI4	F	98	121	Right-handed alpha
Helix 77	AI5	F	151	173	Right-handed alpha
Helix 78	AI6	F	181	186	Right-handed alpha
Helix 79	AI7	F	188	199	Right-handed alpha
Helix 80	AI8	F	201	213	Right-handed alpha
Helix 81	AI9	G	69	79	Right-handed alpha
Helix 82	AJ1	G	80	85	Right-handed alpha
Helix 83	AJ2	G	86	91	Right-handed alpha
Helix 84	AJ3	G	129	151	Right-handed alpha
Helix 85	AJ4	H	104	124	Right-handed alpha
Helix 86	AJ5	I	74	77	Right-handed 310
Helix 87	AJ6	I	78	83	Right-handed alpha
Helix 88	AJ7	I	86	98	Right-handed alpha
Helix 89	AJ8	J	2	8	Right-handed alpha
Helix 90	AJ9	J	10	33	Right-handed alpha
Helix 91	AK1	K	79	98	Right-handed alpha
Helix 92	AK2	K	132	158	Right-handed alpha
Helix 93	AK3	L	129	133	Right-handed 310
Helix 94	AK4	L	142	154	Right-handed alpha
Helix 95	AK5	L	158	166	Right-handed alpha
Helix 96	AK6	L	177	202	Right-handed alpha
Helix 97	AK7	L	227	250	Right-handed alpha
Helix 98	AK8	1	87	119	Right-handed alpha
Helix 99	AK9	1	146	166	Right-handed alpha
Helix 100	AL1	1	189	218	Right-handed alpha
Helix 101	AL2	1	221	232	Right-handed alpha
Helix 102	AL3	a	87	119	Right-handed alpha
Helix 103	AL4	a	146	166	Right-handed alpha
Helix 104	AL5	a	189	218	Right-handed alpha
Helix 105	AL6	a	221	232	Right-handed alpha
Helix 106	AL7	3	51	55	Right-handed 310
Helix 107	AL8	3	79	82	Right-handed 310
Helix 108	AL9	3	83	106	Right-handed alpha
Helix 109	AM1	3	106	114	Right-handed alpha
Helix 110	AM2	3	118	122	Right-handed 310
Helix 111	AM3	3	124	128	Right-handed 310
Helix 112	AM4	3	145	168	Right-handed alpha
Helix 113	AM5	3	179	183	Right-handed 310
Helix 114	AM6	3	206	239	Right-handed alpha
Helix 115	AM7	3	241	252	Right-handed alpha
Helix 116	AM8	3	258	262	Right-handed 310
Helix 117	AM9	4	115	149	Right-handed alpha
Helix 118	AN1	4	160	164	Right-handed 310
Helix 119	AN2	4	171	196	Right-handed alpha
Helix 120	AN3	4	221	225	Right-handed 310
Helix 121	AN4	4	233	262	Right-handed alpha
Helix 122	AN5	4	268	276	Right-handed alpha
Helix 123	AN6	4	281	290	Right-handed alpha
Helix 124	AN7	5	80	112	Right-handed alpha
Helix 125	AN8	5	122	126	Right-handed 310
Helix 126	AN9	5	134	159	Right-handed alpha
Helix 127	AO1	5	195	223	Right-handed alpha
Helix 128	AO2	5	227	238	Right-handed alpha
Helix 129	AO3	6	121	153	Right-handed alpha
Helix 130	AO4	6	170	195	Right-handed alpha
Helix 131	AO5	6	229	256	Right-handed alpha
Helix 132	AO6	6	263	272	Right-handed alpha
Helix 133	AO7	6	277	282	Right-handed alpha
Helix 134	AO8	7	63	93	Right-handed alpha
Helix 135	AO9	7	104	113	Right-handed alpha
Helix 136	AP1	7	117	141	Right-handed alpha
Helix 137	AP2	7	166	171	Right-handed alpha
Helix 138	AP3	7	180	211	Right-handed alpha
Helix 139	AP4	7	214	225	Right-handed alpha
Helix 140	AP5	7	230	234	Right-handed 310
Helix 141	AP6	8	66	70	Right-handed 310
Helix 142	AP7	8	91	114	Right-handed alpha
Helix 143	AP8	8	117	125	Right-handed alpha
Helix 144	AP9	8	147	172	Right-handed alpha
Helix 145	AQ1	8	184	190	Right-handed 310
Helix 146	AQ2	8	199	203	Right-handed 310
Helix 147	AQ3	8	213	241	Right-handed alpha
Helix 148	AQ4	8	245	256	Right-handed alpha
Helix 149	AQ5	2	40	68	Right-handed alpha
Helix 150	AQ6	2	75	80	Right-handed alpha
Helix 151	AQ7	2	87	98	Right-handed alpha
Helix 152	AQ8	2	98	111	Right-handed alpha
Helix 153	AQ9	2	134	159	Right-handed alpha
Helix 154	AR1	2	164	173	Right-handed alpha
Helix 155	AR2	9	62	83	Right-handed alpha
Helix 156	AR3	9	85	90	Right-handed alpha
Helix 157	AR4	9	111	128	Right-handed alpha
Helix 158	AR5	9	129	131	Right-handed 310
Helix 159	AR6	9	153	173	Right-handed alpha
Helix 160	AR7	9	185	193	Right-handed alpha
Helix 161	AR8	9	198	202	Right-handed 310
Helix 162	AR9	X	2	25	Right-handed alpha

There are 15 sheets in PDB entry 6IJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	138	139	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	A	520	521	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	F	132	133	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	67	68	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	166	first strand
Strand 2	D	135	141	anti-parallel
Strand 3	D	188	192	anti-parallel
Strand 4	D	198	200	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	155	157	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	134	first strand
Strand 2	E	117	120	anti-parallel
Strand 3	E	102	108	anti-parallel
Strand 4	E	88	91	anti-parallel
Strand 5	E	139	141	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	124	125	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	106	108	first strand
Strand 2	K	114	116	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	137	138	first strand
Strand 2	1	141	142	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	137	138	first strand
Strand 2	a	141	142	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	283	285	first strand
Strand 2	6	288	290	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	299	300	first strand
Strand 2	6	307	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IJO