Analysis of interatomic Contacts of Structural Units in PDB entry:
6IL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IL9 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 6IL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 344
A
 ASP 346LYS 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6IL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 12Right-handed alpha
Helix 2
AA2
A
19 22Right-handed 310
Helix 3
AA3
A
47 53Right-handed alpha
Helix 4
AA4
A
67 78Right-handed alpha
Helix 5
AA5
A
79 82Right-handed 310
Helix 6
AA6
A
102 111Right-handed alpha
Helix 7
AA7
A
124 131Right-handed alpha
Helix 8
AA8
A
133 149Right-handed alpha
Helix 9
AA9
A
163 173Right-handed alpha
Helix 10
AB1
A
183 186Right-handed 310
Helix 11
AB2
A
187 193Right-handed alpha
Helix 12
AB3
A
194 204Right-handed alpha
Helix 13
AB4
A
206 218Right-handed alpha
Helix 14
AB5
A
232 258Right-handed alpha
Helix 15
AB6
A
279 293Right-handed alpha
Helix 16
AB7
A
317 336Right-handed alpha
Helix 17
AB8
A
347 358Right-handed alpha
Helix 18
AB9
A
367 382Right-handed alpha
Helix 19
AC1
A
382 402Right-handed alpha
Helix 20
AC2
A
409 413Right-handed 310
Helix 21
AC3
A
415 419Right-handed 310
Helix 22
AC4
A
420 429Right-handed 310
Helix 23
AC5
A
430 440Right-handed alpha
Helix 24
AC6
A
440 446Right-handed alpha
Helix 25
AC7
A
456 467Right-handed alpha
Helix 26
AC8
A
467 487Right-handed alpha
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There are 4 sheets in PDB entry 6IL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
23 25anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
61 65anti-parallel
Strand 5
A
56 58anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
116 123parallel
Strand 3
A
155 161parallel
Strand 4
A
177 181parallel
Strand 5
A
266 270parallel
Strand 6
A
299 301parallel
Strand 7
A
338 341parallel
Strand 8
A
362 366parallel
Strand 9
A
92 95parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 224first strand
Strand 2
A
227 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il