Analysis of interatomic Contacts of Structural Units in PDB entry:
6ILZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ILZ entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 6ILZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 254	SER 411
A	PHE 413	LEU 563
A	PRO 565	PRO 587
C	PHE 254	SER 411
C	PHE 413	LEU 563
C	PRO 565	PRO 587
E	ASP 255	SER 411
E	PHE 413	LEU 563
E	PRO 565	PRO 587
G	PHE 254	SER 411
G	PHE 413	LEU 563
G	PRO 565	PRO 587

There are 46 helices in PDB entry 6ILZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	287	291	Right-handed alpha
Helix 2	AA2	A	296	310	Right-handed alpha
Helix 3	AA3	A	340	347	Right-handed alpha
Helix 4	AA4	A	351	373	Right-handed alpha
Helix 5	AA5	A	421	426	Right-handed alpha
Helix 6	AA6	A	432	449	Right-handed alpha
Helix 7	AA7	A	468	477	Right-handed alpha
Helix 8	AA8	A	486	497	Right-handed alpha
Helix 9	AA9	A	511	518	Right-handed alpha
Helix 10	AB1	A	526	532	Right-handed alpha
Helix 11	AB2	A	567	574	Right-handed alpha
Helix 12	AB3	C	287	292	Right-handed alpha
Helix 13	AB4	C	296	310	Right-handed alpha
Helix 14	AB5	C	340	347	Right-handed alpha
Helix 15	AB6	C	351	372	Right-handed alpha
Helix 16	AB7	C	421	427	Right-handed alpha
Helix 17	AB8	C	433	449	Right-handed alpha
Helix 18	AB9	C	469	477	Right-handed alpha
Helix 19	AC1	C	486	497	Right-handed alpha
Helix 20	AC2	C	511	518	Right-handed alpha
Helix 21	AC3	C	526	532	Right-handed alpha
Helix 22	AC4	C	567	574	Right-handed alpha
Helix 23	AC5	E	287	292	Right-handed alpha
Helix 24	AC6	E	296	311	Right-handed alpha
Helix 25	AC7	E	340	347	Right-handed alpha
Helix 26	AC8	E	351	372	Right-handed alpha
Helix 27	AC9	E	421	427	Right-handed alpha
Helix 28	AD1	E	432	449	Right-handed alpha
Helix 29	AD2	E	468	477	Right-handed alpha
Helix 30	AD3	E	486	497	Right-handed alpha
Helix 31	AD4	E	511	519	Right-handed alpha
Helix 32	AD5	E	526	532	Right-handed alpha
Helix 33	AD6	E	567	572	Right-handed alpha
Helix 34	AD7	G	287	292	Right-handed alpha
Helix 35	AD8	G	296	310	Right-handed alpha
Helix 36	AD9	G	340	347	Right-handed alpha
Helix 37	AE1	G	351	373	Right-handed alpha
Helix 38	AE2	G	421	427	Right-handed alpha
Helix 39	AE3	G	433	449	Right-handed alpha
Helix 40	AE4	G	468	477	Right-handed alpha
Helix 41	AE5	G	486	497	Right-handed alpha
Helix 42	AE6	G	511	519	Right-handed alpha
Helix 43	AE7	G	519	524	Right-handed alpha
Helix 44	AE8	G	526	532	Right-handed alpha
Helix 45	AE9	G	547	551	Right-handed 310
Helix 46	AF1	G	567	572	Right-handed alpha

There are 11 sheets in PDB entry 6ILZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	262	first strand
Strand 2	A	266	272	anti-parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	327	333	anti-parallel
Strand 5	A	318	323	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	384	386	anti-parallel
Strand 3	A	392	394	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	262	first strand
Strand 2	C	266	271	anti-parallel
Strand 3	C	280	286	anti-parallel
Strand 4	C	327	333	anti-parallel
Strand 5	C	318	323	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	384	386	anti-parallel
Strand 3	C	392	394	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	375	first strand
Strand 2	C	401	402	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	271	first strand
Strand 2	E	280	286	anti-parallel
Strand 3	E	327	332	anti-parallel
Strand 4	E	318	323	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	339	first strand
Strand 2	E	384	386	anti-parallel
Strand 3	E	392	394	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	375	first strand
Strand 2	E	401	402	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	262	first strand
Strand 2	G	267	271	anti-parallel
Strand 3	G	280	286	anti-parallel
Strand 4	G	327	332	anti-parallel
Strand 5	G	318	323	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	338	339	first strand
Strand 2	G	385	386	anti-parallel
Strand 3	G	392	393	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	375	first strand
Strand 2	G	401	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ILZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ILZ