Analysis of interatomic Contacts of Structural Units in PDB entry:
6IM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IM0 entry

There are 6 chains in PDB entry 6IM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 22	LYS 243
B	GLY 22	LYS 243
C	GLY 22	LYS 243
D	GLY 22	LYS 243
E	GLY 22	LYS 243
F	GLY 22	LYS 243

There are 42 helices in PDB entry 6IM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed 310
Helix 2	AA2	A	33	38	Right-handed alpha
Helix 3	AA3	A	39	41	Right-handed 310
Helix 4	AA4	A	42	47	Right-handed alpha
Helix 5	AA5	A	149	157	Right-handed alpha
Helix 6	AA6	A	174	179	Right-handed 310
Helix 7	AA7	A	213	225	Right-handed alpha
Helix 8	AA8	B	26	32	Right-handed 310
Helix 9	AA9	B	33	38	Right-handed alpha
Helix 10	AB1	B	39	41	Right-handed 310
Helix 11	AB2	B	42	47	Right-handed alpha
Helix 12	AB3	B	149	157	Right-handed alpha
Helix 13	AB4	B	174	179	Right-handed 310
Helix 14	AB5	B	213	225	Right-handed alpha
Helix 15	AB6	C	26	32	Right-handed 310
Helix 16	AB7	C	33	38	Right-handed alpha
Helix 17	AB8	C	39	41	Right-handed 310
Helix 18	AB9	C	42	47	Right-handed alpha
Helix 19	AC1	C	149	157	Right-handed alpha
Helix 20	AC2	C	174	179	Right-handed 310
Helix 21	AC3	C	213	225	Right-handed alpha
Helix 22	AC4	D	26	32	Right-handed 310
Helix 23	AC5	D	33	38	Right-handed alpha
Helix 24	AC6	D	39	41	Right-handed 310
Helix 25	AC7	D	42	47	Right-handed alpha
Helix 26	AC8	D	149	157	Right-handed alpha
Helix 27	AC9	D	174	179	Right-handed 310
Helix 28	AD1	D	213	225	Right-handed alpha
Helix 29	AD2	E	26	32	Right-handed 310
Helix 30	AD3	E	33	38	Right-handed alpha
Helix 31	AD4	E	39	41	Right-handed 310
Helix 32	AD5	E	42	47	Right-handed alpha
Helix 33	AD6	E	149	157	Right-handed alpha
Helix 34	AD7	E	174	179	Right-handed 310
Helix 35	AD8	E	213	225	Right-handed alpha
Helix 36	AD9	F	26	32	Right-handed 310
Helix 37	AE1	F	33	38	Right-handed alpha
Helix 38	AE2	F	39	41	Right-handed 310
Helix 39	AE3	F	42	47	Right-handed alpha
Helix 40	AE4	F	149	157	Right-handed alpha
Helix 41	AE5	F	174	179	Right-handed 310
Helix 42	AE6	F	213	225	Right-handed alpha

There are 18 sheets in PDB entry 6IM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	115	116	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	240	242	parallel
Strand 3	A	185	191	anti-parallel
Strand 4	A	199	206	anti-parallel
Strand 5	A	136	145	parallel
Strand 6	A	123	130	anti-parallel
Strand 7	A	99	109	anti-parallel
Strand 8	A	84	88	anti-parallel
Strand 9	A	74	79	anti-parallel
Strand 10	A	166	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	93	96	anti-parallel
Strand 3	A	99	109	anti-parallel
Strand 4	A	123	130	anti-parallel
Strand 5	A	136	145	anti-parallel
Strand 6	A	210	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	115	116	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	240	242	parallel
Strand 3	B	185	191	anti-parallel
Strand 4	B	199	206	anti-parallel
Strand 5	B	136	145	parallel
Strand 6	B	123	130	anti-parallel
Strand 7	B	99	109	anti-parallel
Strand 8	B	84	88	anti-parallel
Strand 9	B	74	79	anti-parallel
Strand 10	B	166	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	93	96	anti-parallel
Strand 3	B	99	109	anti-parallel
Strand 4	B	123	130	anti-parallel
Strand 5	B	136	145	anti-parallel
Strand 6	B	210	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	115	116	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	240	242	parallel
Strand 3	C	185	191	anti-parallel
Strand 4	C	199	206	anti-parallel
Strand 5	C	136	145	parallel
Strand 6	C	123	130	anti-parallel
Strand 7	C	99	109	anti-parallel
Strand 8	C	84	88	anti-parallel
Strand 9	C	74	79	anti-parallel
Strand 10	C	166	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	C	93	96	anti-parallel
Strand 3	C	99	109	anti-parallel
Strand 4	C	123	130	anti-parallel
Strand 5	C	136	145	anti-parallel
Strand 6	C	210	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	115	116	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	240	242	parallel
Strand 3	D	185	191	anti-parallel
Strand 4	D	199	206	anti-parallel
Strand 5	D	136	145	parallel
Strand 6	D	123	130	anti-parallel
Strand 7	D	99	109	anti-parallel
Strand 8	D	84	88	anti-parallel
Strand 9	D	74	79	anti-parallel
Strand 10	D	166	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	69	first strand
Strand 2	D	93	96	anti-parallel
Strand 3	D	99	109	anti-parallel
Strand 4	D	123	130	anti-parallel
Strand 5	D	136	145	anti-parallel
Strand 6	D	210	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	115	116	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	240	242	parallel
Strand 3	E	185	191	anti-parallel
Strand 4	E	199	206	anti-parallel
Strand 5	E	136	145	parallel
Strand 6	E	123	130	anti-parallel
Strand 7	E	99	109	anti-parallel
Strand 8	E	84	88	anti-parallel
Strand 9	E	74	79	anti-parallel
Strand 10	E	166	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	69	first strand
Strand 2	E	93	96	anti-parallel
Strand 3	E	99	109	anti-parallel
Strand 4	E	123	130	anti-parallel
Strand 5	E	136	145	anti-parallel
Strand 6	E	210	212	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	55	first strand
Strand 2	F	115	116	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	240	242	parallel
Strand 3	F	185	191	anti-parallel
Strand 4	F	199	206	anti-parallel
Strand 5	F	136	145	parallel
Strand 6	F	123	130	anti-parallel
Strand 7	F	99	109	anti-parallel
Strand 8	F	84	88	anti-parallel
Strand 9	F	74	79	anti-parallel
Strand 10	F	166	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	93	96	anti-parallel
Strand 3	F	99	109	anti-parallel
Strand 4	F	123	130	anti-parallel
Strand 5	F	136	145	anti-parallel
Strand 6	F	210	212	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IM0