Analysis of interatomic Contacts of Structural Units in PDB entry:
6IME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IME entry

There are 2 chains in PDB entry 6IME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12ALA 296
B
 ASN 12ALA 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6IME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 67Right-handed 310
Helix 2
AA2
A
77 85Right-handed alpha
Helix 3
AA3
A
88 111Right-handed alpha
Helix 4
AA4
A
123 127Right-handed 310
Helix 5
AA5
A
128 153Right-handed alpha
Helix 6
AA6
A
167 182Right-handed alpha
Helix 7
AA7
A
196 214Right-handed alpha
Helix 8
AA8
A
218 222Right-handed 310
Helix 9
AA9
A
223 231Right-handed alpha
Helix 10
AB1
A
270 274Right-handed 310
Helix 11
AB2
A
275 289Right-handed alpha
Helix 12
AB3
B
63 67Right-handed 310
Helix 13
AB4
B
77 85Right-handed alpha
Helix 14
AB5
B
88 111Right-handed alpha
Helix 15
AB6
B
123 127Right-handed 310
Helix 16
AB7
B
128 153Right-handed alpha
Helix 17
AB8
B
167 182Right-handed alpha
Helix 18
AB9
B
196 214Right-handed alpha
Helix 19
AC1
B
218 222Right-handed 310
Helix 20
AC2
B
223 231Right-handed alpha
Helix 21
AC3
B
270 274Right-handed 310
Helix 22
AC4
B
275 289Right-handed alpha
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There are 4 sheets in PDB entry 6IME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
52 53parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
187 195parallel
Strand 3
A
114 121parallel
Strand 4
A
70 74parallel
Strand 5
A
241 244parallel
Strand 6
A
263 266parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
52 53parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
187 195parallel
Strand 3
B
114 121parallel
Strand 4
B
70 74parallel
Strand 5
B
241 244parallel
Strand 6
B
263 266parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il