Analysis of interatomic Contacts of Structural Units in PDB entry:
6IMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IMJ entry

There are 4 chains in PDB entry 6IMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ILE 419
B	MSE 1	ILE 419
C	C 3	G 22
D	C 2	A 22

There are 23 helices in PDB entry 6IMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	5	Right-handed 310
Helix 2	AA2	A	47	52	Right-handed 310
Helix 3	AA3	A	94	114	Right-handed alpha
Helix 4	AA4	A	136	141	Right-handed 310
Helix 5	AA5	A	180	192	Right-handed alpha
Helix 6	AA6	A	210	220	Right-handed alpha
Helix 7	AA7	A	243	258	Right-handed alpha
Helix 8	AA8	A	274	288	Right-handed alpha
Helix 9	AA9	A	335	339	Right-handed 310
Helix 10	AB1	A	362	373	Right-handed alpha
Helix 11	AB2	A	374	382	Right-handed alpha
Helix 12	AB3	A	414	418	Right-handed 310
Helix 13	AB4	B	48	52	Right-handed 310
Helix 14	AB5	B	94	114	Right-handed alpha
Helix 15	AB6	B	136	141	Right-handed 310
Helix 16	AB7	B	180	194	Right-handed alpha
Helix 17	AB8	B	210	220	Right-handed alpha
Helix 18	AB9	B	243	258	Right-handed alpha
Helix 19	AC1	B	274	288	Right-handed alpha
Helix 20	AC2	B	335	339	Right-handed 310
Helix 21	AC3	B	362	373	Right-handed alpha
Helix 22	AC4	B	374	382	Right-handed alpha
Helix 23	AC5	B	414	418	Right-handed 310

There are 12 sheets in PDB entry 6IMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	13	15	anti-parallel
Strand 3	A	28	39	anti-parallel
Strand 4	A	58	68	anti-parallel
Strand 5	A	74	75	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	22	first strand
Strand 2	A	28	39	anti-parallel
Strand 3	A	58	68	anti-parallel
Strand 4	A	79	81	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	310	317	parallel
Strand 3	A	292	296	anti-parallel
Strand 4	A	147	151	anti-parallel
Strand 5	A	270	271	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	198	205	anti-parallel
Strand 4	A	228	236	anti-parallel
Strand 5	A	264	266	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	332	first strand
Strand 2	A	342	347	anti-parallel
Strand 3	A	353	358	anti-parallel
Strand 4	A	405	409	parallel
Strand 5	A	386	390	anti-parallel
Strand 6	A	324	332	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	13	15	anti-parallel
Strand 3	B	28	39	anti-parallel
Strand 4	B	58	68	anti-parallel
Strand 5	B	79	81	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	22	first strand
Strand 2	B	28	39	anti-parallel
Strand 3	B	42	43	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	58	68	anti-parallel
Strand 3	B	74	75	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	310	317	parallel
Strand 3	B	292	296	anti-parallel
Strand 4	B	147	151	anti-parallel
Strand 5	B	270	271	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	155	161	anti-parallel
Strand 3	B	199	205	anti-parallel
Strand 4	B	228	235	anti-parallel
Strand 5	B	264	266	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	332	first strand
Strand 2	B	342	347	anti-parallel
Strand 3	B	353	358	anti-parallel
Strand 4	B	405	409	parallel
Strand 5	B	386	390	anti-parallel
Strand 6	B	324	332	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	400	401	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IMJ